PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_015874418.1
Organism
Ziziphus jujuba
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rhamnaceae; Paliureae; Ziziphus
Family GATA
Protein Properties Length: 240aa    MW: 26993.8 Da    PI: 10.5832
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_015874418.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA581.2e-18154187134
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                     C +C +t+Tp+WR+gp g+ktLCnaCG++yr+ +
  XP_015874418.1 154 CMHCEVTSTPQWREGPMGPKTLCNACGVRYRSGR 187
                     99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.202148184IPR000679Zinc finger, GATA-type
SMARTSM004014.2E-16148198IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.2E-14152185IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577163.61E-15152211No hitNo description
CDDcd002026.68E-15153202No hitNo description
PROSITE patternPS003440154179IPR000679Zinc finger, GATA-type
PfamPF003202.1E-16154187IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
LGVQFERTQI KQEPSSGDTT SSRSNPLSDD SSDVKHRHQF KTSSPVSILE SSSISCFIEN  60
PRMIDSKFAP LKRARSKRLR RQQITFPFMS PSSSASENLY LSTASESDTE THLSDEILKP  120
AKRKQKRKKN LLQLSSEERR KLLVLQEQGE AKKCMHCEVT STPQWREGPM GPKTLCNACG  180
VRYRSGRLFP EYRPAASPTF IPSLHSNSHK KVIEMRSKGR ATMGTLSSIQ PGKILDSLII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1121128KRKQKRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00047PBMTransfer from AT1G08000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_015874418.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015874418.21e-128GATA transcription factor 11-like
TrEMBLA0A2H5NER31e-67A0A2H5NER3_CITUN; Uncharacterized protein
STRINGXP_006424556.17e-68(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57582849
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.23e-41GATA family protein