PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G08000.1 | ||||||||
Common Name | GATA10, T6D22.9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | GATA | ||||||||
Protein Properties | Length: 308aa MW: 34289.9 Da PI: 9.0425 | ||||||||
Description | GATA transcription factor 10 | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 62.2 | 6.1e-20 | 220 | 254 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C++C t++Tp+WR+gp+g+ktLCnaCG+++++ +l AT1G08000.1 220 CTHCETITTPQWRQGPSGPKTLCNACGVRFKSGRL 254 *******************************9885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 1.1E-19 | 214 | 264 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.76E-15 | 218 | 277 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.3E-15 | 218 | 252 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 1.27E-16 | 219 | 268 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 220 | 245 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.123 | 220 | 250 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 1.8E-17 | 220 | 254 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0025195 | anatomy | pollen tube cell |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MNWLPEAEAE EHLKGILSGD FFDGLTNHLD CPLEDIDSTN GEGDWVARFQ DLEPPPLDMF 60 PALPSDLTSC PKGAARVRIP NNMIPALKQS CSSEALSGIN STPHQSSAPP DIKVSYLFQS 120 LTPVSVLENS YGSLSTQNSG SQRLAFPVKG MRSKRRRPTT VRLSYLFPFE PRKSTPGESV 180 TEGYYSSEQH AKKKRKIHLI THTESSTLES SKSDGIVRIC THCETITTPQ WRQGPSGPKT 240 LCNACGVRFK SGRLVPEYRP ASSPTFIPSV HSNSHRKIIE MRKKDDEFDT SMIRSDIQKV 300 KQGRKKMV |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.27130 | 0.0 | cell culture| flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 260680_s_at | 0.0 | ||||
Expression Atlas | AT1G08000 | - | ||||
AtGenExpress | AT1G08000 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | Encodes a member of the GATA factor family of zinc finger transcription factors. | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00047 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G08000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G08000 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY063953 | 0.0 | AY063953.1 Arabidopsis thaliana putative GATA transcription factor 3 (At1g08000) mRNA, complete cds. | |||
GenBank | AY096723 | 0.0 | AY096723.1 Arabidopsis thaliana putative GATA transcription factor 3 (At1g08000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_172278.1 | 0.0 | GATA transcription factor 10 | ||||
Refseq | NP_973790.1 | 0.0 | GATA transcription factor 10 | ||||
Swissprot | Q8VZP4 | 0.0 | GAT10_ARATH; GATA transcription factor 10 | ||||
TrEMBL | A0A178WGW3 | 0.0 | A0A178WGW3_ARATH; GATA10 | ||||
STRING | AT1G08000.2 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1681 | 25 | 89 | Representative plant | OGRP68 | 17 | 287 |
Link Out ? help Back to Top | |
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Phytozome | AT1G08000.1 |
Entrez Gene | 837315 |
iHOP | AT1G08000 |
wikigenes | AT1G08000 |