PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Zjn_sc00078.1.g02410.1.am.mk | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
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Family | TCP | ||||||||
Protein Properties | Length: 470aa MW: 48306 Da PI: 7.0346 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 118.7 | 7e-37 | 179 | 283 | 6 | 111 |
TCP 6 drhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 r+ ++hTkv+gR+RR+R++a caar+F+L++eLG+++d++ti WLlqq++pai+++tgt++ +a ++ +++ + ++s Zjn_sc00078.1.g02410.1.am.mk 179 PRNRDRHTKVEGRGRRIRMPAACAARIFQLTRELGHKSDGETIRWLLQQSEPAIIAATGTGTVPAIAT-TVDGVLRIPTQS 258 6999********************************************************88888444.444444444444 PP TCP 87 sgkaaksaakskksqksaasalnla 111 s+++++sa + ++s+a+ + + Zjn_sc00078.1.g02410.1.am.mk 259 SSSSSPSALAVVDGDESSAKRRRKL 283 4433333332222222222222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 27.381 | 181 | 235 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 2.4E-30 | 181 | 273 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 470 aa Download sequence Send to blast |
MSCGALACLQ ACSLKLVHCP THPTCNTINS YRWIQLGRPG PSASGPRSTA GPAATITIKA 60 AGPGTGQPGP HPDPVGRLPR DSCDAQIREP SKPSLLPPTR NERDEPQATN PAASCSIRAM 120 EAPQAQDRAA AEEDAARQHQ VPSGGAAAMG AIPMHGFIVP KPEPVEYFGG MAMVRKPPPR 180 NRDRHTKVEG RGRRIRMPAA CAARIFQLTR ELGHKSDGET IRWLLQQSEP AIIAATGTGT 240 VPAIATTVDG VLRIPTQSSS SSSPSALAVV DGDESSAKRR RKLQPTRAGA SPLATAAPAA 300 YYPVVADPLL QGTGGAAISV PSGLAPVGAS GAPQGLVPVF AVPAAGGPVT GGANRMIPQA 360 TAVWMVPQPG GAADAGNQPA QFWAFPAAPQ LINLAGAQTV PAGAVYQTSV SVAGYQQPQQ 420 QISTTSTHNN NNSEQQHPGS GSRGGGGADH PVEEDDDDDE EPVSDSSPEE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681}. | |||||
UniProt | Transcription activator. Binds the promoter core sequence 5'-GGNCC-3', especially at sites IIa (5'-GGGCCCAC-3') and IIb (5'-GGTCCCAC-3') (essential for meristematic tissue-specificity expression) of the PCNA gene promoter. {ECO:0000269|PubMed:12000681, ECO:0000269|PubMed:9338963}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00667 | PBM | Transfer from GSVIVG01027588001 | Download |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU945866 | 0.0 | EU945866.1 Zea mays clone 288123 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008664491.3 | 1e-149 | transcription factor PCF2 | ||||
Swissprot | A2YXQ1 | 1e-145 | PCF2_ORYSI; Transcription factor PCF2 | ||||
Swissprot | Q6ZBH6 | 1e-145 | PCF2_ORYSJ; Transcription factor PCF2 | ||||
TrEMBL | A0A317Y4S8 | 1e-146 | A0A317Y4S8_MAIZE; Transcription factor PCF2 | ||||
STRING | ORUFI08G24920.1 | 1e-144 | (Oryza rufipogon) | ||||
STRING | OS08T0544800-01 | 1e-144 | (Oryza sativa) | ||||
STRING | ONIVA08G25460.1 | 1e-144 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3912 | 31 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 5e-41 | TCP family protein |
Publications ? help Back to Top | |||
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