PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01027588001
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family TCP
Protein Properties Length: 341aa    MW: 36376.4 Da    PI: 9.5841
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01027588001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP119.54.2e-371132092100
                TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.....eaesssssasnsssg 88 
                        ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++                 +++
  GSVIVT01027588001 113 PVKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsvggtL-----------KIP 193
                        689*************************************************************99999555222210...........111 PP

                TCP  89 ...kaaksaa.kskks 100
                            a ++++ ++kk+
  GSVIVT01027588001 194 ttsTATTQEPdPNKKK 209
                        1111111111111111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.0E-30118204IPR005333Transcription factor, TCP
PROSITE profilePS5136927.141119173IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0048364Biological Processroot development
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MKQITLRSGT HHVLSSIQKQ EVEEEDDTRA VDLRINGGEN AESIDHKKDD NRAPSSDPPS  60
AAQPQEQPVA AVAAISLKAE PDAEERSPAA PPAMGVVPVA MPMPVQVRRP APPVKRASTK  120
DRHTKVEGRG RRIRMPATCA ARIFQLTREL GHKSDGETIR WLLEHAEPAI IAATGTGTVP  180
AIAMSVGGTL KIPTTSTATT QEPDPNKKKR KRPANSEFVD VNDAVSVSSG LAPIATPLAP  240
QGLVPMWAIP SNAVGAFWMV PPTTAIAGPS NQPQIWTFPP TATPLINISA RPISSFVSSM  300
HPTINVASAT ASAASTMLRD FSLEIYDKQE LQFMSRSSKH *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204210PNKKKRK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00667PBM25215497Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4860470.0AM486047.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X118486.3, clone ENTAV 115.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002272896.10.0PREDICTED: transcription factor TCP9
SwissprotO646471e-91TCP9_ARATH; Transcription factor TCP9
TrEMBLA0A438DZY80.0A0A438DZY8_VITVI; Transcription factor TCP9
STRINGVIT_15s0048g01150.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP31781129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45680.12e-88TCP family protein