PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G45680.1 | ||||||||
Common Name | F17K2.21, TCP9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | TCP | ||||||||
Protein Properties | Length: 356aa MW: 37630.8 Da PI: 10.0733 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119 | 5.7e-37 | 69 | 161 | 2 | 95 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 + k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl++a+pai+++tgt++ +a ++ + + + +++++ ++ AT2G45680.1 69 PLKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMsV--NGTLKIPTTTNADSDMGEN 161 57999***********************************************************8888844421..1111111111112222222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.1E-30 | 74 | 155 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.327 | 75 | 129 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:0048364 | Biological Process | root development | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 356 aa Download sequence Send to blast |
MATIQKLEEV AGKDQTLRAV DLTIINGVRN VETSRPFQVN PTVSLEPKAE PVMPSFSMSL 60 APPSSTGPPL KRASTKDRHT KVEGRGRRIR MPATCAARIF QLTRELGHKS DGETIRWLLE 120 NAEPAIIAAT GTGTVPAIAM SVNGTLKIPT TTNADSDMGE NLMKKKRKRP SNSEYIDISD 180 AVSASSGLAP IATTTTIQPP QALASSTVAQ QLLPQGMYPM WAIPSNAMIP TVGAFFLIPQ 240 IAGPSNQPQL LAFPAAAASP SSYVAAVQQA STMARPPPLQ VVPSSGFVSV SDVSGSNLSR 300 ATSVMAPSSS SGVTTGSSSS IATTTTHTLR DFSLEIYEKQ ELHQFMSTTT ARSSNH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.24576 | 0.0 | floral meristem| flower| root| seed| silique |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 267515_at | 0.0 | ||||
Expression Atlas | AT2G45680 | - | ||||
AtGenExpress | AT2G45680 | - | ||||
ATTED-II | AT2G45680 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in archespores, pollen mother cell, ovule primordia and megaspore mother cells. {ECO:0000269|PubMed:25527103}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00316 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G45680.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
BioGRID | AT4G18170, AT4G27330 | |||||
IntAct | Search O64647 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G45680 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC003680 | 0.0 | AC003680.3 Arabidopsis thaliana chromosome 2 BAC F17K2 genomic sequence, complete sequence. | |||
GenBank | AF370606 | 0.0 | AF370606.1 Arabidopsis thaliana putative PCF2-like DNA binding protein (At2g45680; F17K2.21) mRNA, complete cds. | |||
GenBank | AK221599 | 0.0 | AK221599.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL07-89-L23. | |||
GenBank | AY056214 | 0.0 | AY056214.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds. | |||
GenBank | AY113981 | 0.0 | AY113981.1 Arabidopsis thaliana putative PCF2 DNA binding protein (At2g45680) mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_182092.1 | 0.0 | TCP family transcription factor | ||||
Swissprot | O64647 | 0.0 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A178VZF4 | 0.0 | A0A178VZF4_ARATH; TCP9 | ||||
STRING | AT2G45680.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9831 | 24 | 34 | Representative plant | OGRP3178 | 11 | 29 |
Link Out ? help Back to Top | |
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Phytozome | AT2G45680.1 |
Entrez Gene | 819176 |
iHOP | AT2G45680 |
wikigenes | AT2G45680 |