PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00049.1.g00990.1.sm.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family WRKY
Protein Properties Length: 356aa    MW: 37755.7 Da    PI: 6.402
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00049.1.g00990.1.sm.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY87.61e-27128188259
                                   --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                          WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                   dDg++WrKYGqK++ g++fpr+YYrCt++   gC ++k+v+rs++d  v+++tY+geH+++
  Zjn_sc00049.1.g00990.1.sm.mk 128 DDGFSWRKYGQKDILGAKFPRGYYRCTYRgtqGCLATKQVQRSDSDLCVFDVTYQGEHTCH 188
                                   8***************************99889**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.1E-27120189IPR003657WRKY domain
PROSITE profilePS5081122.768122185IPR003657WRKY domain
SuperFamilySSF1182902.22E-24126188IPR003657WRKY domain
SMARTSM007743.0E-39127189IPR003657WRKY domain
PfamPF031061.5E-25128188IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009816Biological Processdefense response to bacterium, incompatible interaction
GO:0010150Biological Processleaf senescence
GO:0010193Biological Processresponse to ozone
GO:0010200Biological Processresponse to chitin
GO:0031347Biological Processregulation of defense response
GO:0042542Biological Processresponse to hydrogen peroxide
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MQDGAGGGGG EGGMHLLLSI LADGEDQARL LAELPADDPR LGAEHYRAAA RRLQCTLGKA  60
MSVARAIEAA AASRGTDSPR SADEGSGGSG TAPVEALERP AVCKRRKGLP RWTAKFRVPD  120
ANLEATPDDG FSWRKYGQKD ILGAKFPRGY YRCTYRGTQG CLATKQVQRS DSDLCVFDVT  180
YQGEHTCHQK LRHASASVAG ASHHHDMSQP PPPPDPSTEL LPGFTERLKV ETTTDQAPLH  240
ASSSRDQDHA VSASPFAFHA GGVAPDEAFA SVPAGASYYA VPHCLEPGSG YDDYGYDLPR  300
MRGAGSELGE VVSRATAPVA ADPSNAGFEY SLYHHGEFDP HLPFAPSGGG CGSRHW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-201291851874Disease resistance protein RRS1
5w3x_D3e-201291851874Disease resistance protein RRS1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00525DAPTransfer from AT5G24110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811264.11e-119probable WRKY transcription factor 53
TrEMBLA0A2S3HLN71e-118A0A2S3HLN7_9POAL; Uncharacterized protein
STRINGSi008812m1e-111(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133402730
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.12e-38WRKY family protein