PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zjn_sc00003.1.g03070.1.am.mk
Organism
Zoysia japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family MYB
Protein Properties Length: 686aa    MW: 73683.5 Da    PI: 8.9272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zjn_sc00003.1.g03070.1.am.mkgenomeZGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding56.18.2e-181461148
                                  TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                  rgrWT+eEde+l+ +++++G g+W++ ++  g+ R++k+c++rw +yl
  Zjn_sc00003.1.g03070.1.am.mk 14 RGRWTAEEDEILASYIAKHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                                  89******************************99************97 PP
2Myb_DNA-binding39.99.8e-1367173148
                                   TSSS-HHHHHHHHHHHHHTTTT........................................................... CS
               Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg........................................................... 22 
                                   rg+ ++eE+++++++++ lG+                                                            
  Zjn_sc00003.1.g03070.1.am.mk  67 RGNISKEEEDIIIKLHATLGNSlkeaqghdsrdprsrlrfgggelssvptpksssrhsvkrtgvgcyvhrwsvpvrvpagl 147
                                   7899****************99*********************************************************** PP

                                   .-HHHHHHHHTTTS-HHHHHHHHHHHT CS
               Myb_DNA-binding  23 .tWktIartmgkgRtlkqcksrwqkyl 48 
                                    tW++Ia++++ gRt++++k++w+++l
  Zjn_sc00003.1.g03070.1.am.mk 148 mTWSLIASHLP-GRTDNEIKNYWNSHL 173
                                   ***********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-22564IPR009057Homeodomain-like
PROSITE profilePS5129422.439965IPR017930Myb domain
SMARTSM007173.7E-131363IPR001005SANT/Myb domain
PfamPF002495.8E-161461IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-201588IPR009057Homeodomain-like
CDDcd001676.22E-111661No hitNo description
PROSITE profilePS500907.50362173IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.1E-206585IPR009057Homeodomain-like
SMARTSM007171.1E-1166175IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-20146177IPR009057Homeodomain-like
PfamPF002493.6E-7149173IPR001005SANT/Myb domain
SuperFamilySSF466895.46E-7149178IPR009057Homeodomain-like
CDDcd001672.04E-6150173No hitNo description
PfamPF066408.0E-57191391IPR010588Myb-related protein P, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 686 aa     Download sequence    Send to blast
MGRAPCCEKV GLKRGRWTAE EDEILASYIA KHGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADVKRGNI SKEEEDIIIK LHATLGNSLK EAQGHDSRDP RSRLRFGGGE LSSVPTPKSS  120
SRHSVKRTGV GCYVHRWSVP VRVPAGLMTW SLIASHLPGR TDNEIKNYWN SHLSRQIHTY  180
RRIFTAGNDT TITIDISKLH SAGKRRGGRT PGRSALKSTT SSDDKTGSKK VDAEPEPAKT  240
TTKAKETSAF SPAAATSAAS SPPQSDDGAR SVVVDPDQNQ PNSVSDNDGP CSEDASGLMT  300
SLLEEPLDLG LWEAETEMDM EALLLSNTGI DGAAGYSSSF TTGLEAAAGD DLLDMDWDGF  360
AAHLWGDPAQ NNQAAAEPQA AVGCNPEELE SRSDDSGRLR HKDATMETAP PHCEFVIFSY  420
PYQLQRRKYD KRRISLGALR ILAPLAVDAV SCPRTAAGQS PIARHGRGGN GRDDDIMLNQ  480
SIDLHFYRYV FASEILMTRR ATSHPACPAR DRRSADGSVP GGVAKTCLVA LSGELFGPAE  540
CGRRVGWIAH RPAAHLQGTR RAPAEGEDDA ATPPAPDTAR ARQPSASCAL PLRAAAPVPV  600
SSTHPLRFAV TKSGGSAVTE RGNHHRFRLS VGAPVDGRTR ISAWVIIAVV VLPASDPFVS  660
YRARKGGAAQ RLCKGGSYGS SSQANP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0394853e-82BT039485.1 Zea mays full-length cDNA clone ZM_BFc0015O24 mRNA, complete cds.
GenBankEU9594663e-82EU959466.1 Zea mays clone 218238 myb-related protein Myb4 mRNA, complete cds.
GenBankHQ8586643e-82HQ858664.1 Zea mays clone UT603 MYB transcription factor mRNA, complete cds.
GenBankKJ7283433e-82KJ728343.1 Zea mays clone pUT6624 MYB-related transcription factor (MYBR102) mRNA, partial cds.
GenBankKJ7283953e-82KJ728395.1 Zea mays clone pUT6679 MYB transcription factor (MYB3) mRNA, partial cds.
GenBankZMU570023e-82U57002.1 Zea mays P protein (P) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025797897.11e-115myb-related protein P-like
TrEMBLA0A0E0KCP61e-118A0A0E0KCP6_ORYPU; Uncharacterized protein
STRINGOPUNC03G13890.11e-119(Oryza punctata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP7938563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-56myb domain protein 111