PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSVIVT01028091001
Common NameVIT_07s0005g01210
Organism
Vitis vinifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; rosids incertae sedis; Vitales; Vitaceae; Vitis
Family MYB
Protein Properties Length: 368aa    MW: 40873.4 Da    PI: 4.7016
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSVIVT01028091001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-161461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +grWT+eEde lv++++  G g+W++ ++  g+ R++k+c++rw +yl
  GSVIVT01028091001 14 KGRWTAEEDEVLVKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                       79******************************99************97 PP
2Myb_DNA-binding55.41.4e-1767112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eE+e+++++++ lG++ W+ Ia  ++ gRt++++k++w+++l
  GSVIVT01028091001  67 RGNFSEEEEEIIIKLHASLGNR-WSMIAGQLP-GRTDNEIKNYWNSHL 112
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.819961IPR017930Myb domain
SuperFamilySSF466899.17E-2911108IPR009057Homeodomain-like
SMARTSM007171.1E-111363IPR001005SANT/Myb domain
PfamPF002493.6E-141461IPR001005SANT/Myb domain
CDDcd001671.80E-81661No hitNo description
PROSITE profilePS5129426.79162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2665116IPR009057Homeodomain-like
SMARTSM007172.4E-1666114IPR001005SANT/Myb domain
PfamPF002493.8E-1567112IPR001005SANT/Myb domain
CDDcd001678.52E-680112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009813Biological Processflavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRAPCCEKV GLKKGRWTAE EDEVLVKYIQ ANGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNF SEEEEEIIIK LHASLGNRWS MIAGQLPGRT DNEIKNYWNS HLSRKVHSFR  120
RLTNEGPSMV IDLAKVTTAH KRKVGRTSRW AMKKNRSDKS IREDVNKSSL EKPKGDDDGN  180
GVIAEKETRS ETMTGDLYAQ VNEEENPELM ASHLLGCGGR MFGEGSETFG PFRVPEVEGL  240
CFSENMESGV LVDGGGLVSS GTEERASGAT CSNKTTPFGG DVEGRNLSSD NGDQTVDQWP  300
SCSSPTSYFD DWNWESSAVN GQELWDEKEE MLSWLWEDSD GGEVECETFG GDLDCEKQNA  360
MVAWLLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-26121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-261211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Vvi.245610.0leaf
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00627PBMTransfer from PK06182.1Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ4234220.0GQ423422.1 Vitis vinifera cultivar Chardonnay MYBF1 (mybF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001267930.10.0R2R3 MYB 12 transcription factor
TrEMBLD7U2G10.0D7U2G1_VITVI; Uncharacterized protein
STRINGVIT_07s0005g01210.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.16e-83myb domain protein 12