PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi11g10120.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family TCP
Protein Properties Length: 366aa    MW: 38860.9 Da    PI: 7.7667
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi11g10120.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP132.93e-41722012112
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg...... 88 
                      ++k+++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pa++++tgt++++a+++  + s +ss+s+ s++      
  Vradi11g10120.1  72 PPKRTSTKDRHTKVDGRGRRIRMPAACAARVFQLTRELGHKSDGETIEWLLQQAEPAVIAATGTGTIPANFTsLNISLRSSGSTMSAPshyfrg 165
                      789******************************************************************9998777777777755555445555 PP

              TCP  89 ............kaaksaakskksqksaasalnlak 112
                                  +aa++aa+ +++ + + s++ +++
  Vradi11g10120.1 166 nyfnpstfststAAAAAAAQLRNRAEWDRSMSMVME 201
                      554444443332222222222222222333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.9E-4076264IPR005333Transcription factor, TCP
PROSITE profilePS5136927.68378132IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0008283Biological Processcell proliferation
GO:0009735Biological Processresponse to cytokinin
GO:0010229Biological Processinflorescence development
GO:0010252Biological Processauxin homeostasis
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0042023Biological ProcessDNA endoreduplication
GO:0048467Biological Processgynoecium development
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MIELIWMADH QNGIRTRPNF PLQLLEKKDV DDVTEQPCST TTRDSVVTAT TITTASVTNN  60
NLHLAEQSKK PPPKRTSTKD RHTKVDGRGR RIRMPAACAA RVFQLTRELG HKSDGETIEW  120
LLQQAEPAVI AATGTGTIPA NFTSLNISLR SSGSTMSAPS HYFRGNYFNP STFSTSTAAA  180
AAAAQLRNRA EWDRSMSMVM EDSRRSMLEN TSSISAILNF NPMGNINVIQ QAKQELREES  240
GGGLESVASD SDGSLGRKRR PEQELSQMGS YLIQSSTGSL PSSHASNTAA FWMVAGHGNQ  300
SMSGGGGGGS GNGNDNPIWA IPSVGNSGVY RGGIQIPANG VSESPGSAGQ PHGGDDGRDS  360
TSQHS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00224DAPTransfer from AT1G69690Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi11g10120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150430.0AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014519330.10.0transcription factor TCP15
TrEMBLA0A1S3VM090.0A0A1S3VM09_VIGRR; transcription factor TCP15
STRINGXP_007157639.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21203280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G58100.11e-47TCP family protein