PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi06g09920.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 311aa    MW: 34788.6 Da    PI: 7.7191
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi06g09920.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.48.4e-18199233135
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                      C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Vradi06g09920.1 199 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 233
                      99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.9E-17193243IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.149193229IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-16194257No hitNo description
Gene3DG3DSA:3.30.50.101.6E-14195230IPR013088Zinc finger, NHR/GATA-type
CDDcd002024.24E-14198245No hitNo description
PROSITE patternPS003440199224IPR000679Zinc finger, GATA-type
PfamPF003201.1E-15199233IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MESPNSSPIF PQFTLDTTTT KNNNPDHFIV EDLLDFSNDD AVNADTIFDS LPVNSTDSSN  60
YDDIAELEWL SNFVEESFSS EDLQKMQLIS GMNARNDHVP KARGFHSEPT RNGFHSEPTR  120
NNPIFNSEVS VPAKARSKRS RGPPCNWASR LLVLSPTTSS SDTEVVAPVS THSGTKKPAK  180
TTPRKKDSGD GSGGDGRRCL HCATDKTPQW RTGPMGPKTL CNACGVRYKS GRLVPEYRPA  240
ASPTFVLTKH SNSHRKVLEL RRQKEMVRAQ QHQQQQFLQH HHHQNMLLDV SNSEDYLVHQ  300
HMGPDYRQLI *
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi06g09920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014503230.10.0GATA transcription factor 12-like
SwissprotO826322e-87GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A1S3UB340.0A0A1S3UB34_VIGRR; GATA transcription factor
STRINGXP_007140987.11e-177(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.13e-81GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]