PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi04g00160.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 533aa    MW: 59169.9 Da    PI: 6.0029
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi04g00160.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.63.1e-1874131155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++++GVr++  +g+WvAeIr+p + g     k  r +lg+f ta eAa a+++a+k+++g
  Vradi04g00160.1  74 CKFRGVRQRI-WGKWVAEIREPIN-GklvgeKANRLWLGTFSTALEAALAYDEAAKAMYG 131
                      79*****998.**********855.55976666************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.6E-1374131IPR001471AP2/ERF domain
CDDcd000185.36E-3174140No hitNo description
Gene3DG3DSA:3.30.730.105.9E-2875140IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-1875140IPR016177DNA-binding domain
SMARTSM003806.9E-3575145IPR001471AP2/ERF domain
PROSITE profilePS5103221.65475139IPR001471AP2/ERF domain
PRINTSPR003672.6E-87687IPR001471AP2/ERF domain
PRINTSPR003672.6E-8105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 533 aa     Download sequence    Send to blast
MKTNTNVSGK RKSRKRRSSG SDSLENTLEK WKEYNRQQEL GSRKNGVEVI QKAPAKGSRK  60
GCMRGKGGPQ NSDCKFRGVR QRIWGKWVAE IREPINGKLV GEKANRLWLG TFSTALEAAL  120
AYDEAAKAMY GPSARLNFPD PSVEQILSNG SSSSSGCDKK SLSGSSENDG DVDKAESERN  180
LHQPHEEKPR FSEVGVFEVT QEKLILSGGC VADDSIEELK EMTSGFEQCQ TSEECKAITS  240
KNIKSEIPEE SEGIERELER FLKNSGIGEE DTLLHNETLD IAMNTGANYC SSSDAAEHDI  300
VEKSEETRGE SVETFKPCEL SCSNHCLGCM HNMLQDSNSK PHSEHLNNNR SEASIARKHT  360
EEVISEILGL CHSKCLKISH DQSSHEHYTT EHFDETRTKL KCLECKLRTH SIHYKTQAPI  420
VGDSNYPSMQ GIHMFGGGTV GPIESMSQID AMNNINTSRN SLPGFSSGHS RKLCDLSQQL  480
HKLGGCLPEH WNNMQFADLE VGYDYSFLNP DYDFGLLEEK KLLDVCFPQI GS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1676139360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11217SRKRRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00302DAPTransfer from AT2G40340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi04g00160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150370.0AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014497419.10.0uncharacterized protein LOC106758920
TrEMBLA0A1S3TUJ30.0A0A1S3TUJ3_VIGRR; uncharacterized protein LOC106758920
STRINGXP_007140202.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132862127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40350.12e-33ERF family protein