PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G40350.1 | ||||||||
Common Name | DREB2H, ERF047, T3G21.12 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | ERF | ||||||||
Protein Properties | Length: 157aa MW: 17791.6 Da PI: 10.6001 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51 | 3.5e-16 | 65 | 115 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++y+GVr++ +g+WvAeIr+p g r ++ +lg+f + +eAa a+++a k+++g AT2G40350.1 65 CDYTGVRQRT-WGKWVAEIREP---G-RgAKLWLGTFSSSYEAALAYDEASKAIYG 115 68*****999.**********8...4.45*********************999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 6.5E-12 | 65 | 115 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.56E-26 | 65 | 123 | No hit | No description |
PROSITE profile | PS51032 | 19.388 | 66 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-29 | 66 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-18 | 67 | 124 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.9E-8 | 67 | 78 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-26 | 67 | 123 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.9E-8 | 89 | 105 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010286 | Biological Process | heat acclimation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MPRKRKSRGT RDVAEILRKW REYNEQTEAD SCIDGGGSKP IRKAPPKRSR KGCMKGKGGP 60 ENGICDYTGV RQRTWGKWVA EIREPGRGAK LWLGTFSSSY EAALAYDEAS KAIYGQSARL 120 NLPLLPLCQA RLLHFLMNLK FVHVRIQMQD LVLVRSD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 8e-16 | 67 | 124 | 3 | 61 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 9e-16 | 67 | 124 | 6 | 64 | ATERF1 |
3gcc_A | 9e-16 | 67 | 124 | 6 | 64 | ATERF1 |
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Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.50673 | 0.0 | flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 79572106 | 0.0 | ||||
Genevisible | 263823_s_at | 0.0 | ||||
Expression Atlas | AT2G40350 | - | ||||
AtGenExpress | AT2G40350 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought. | |||||
UniProt | Putative transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. {ECO:0000250, ECO:0000269|PubMed:11798174}. |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G40350.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G40350 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC007020 | 0.0 | AC007020.5 Arabidopsis thaliana chromosome 2 clone T3G21 map g4514, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_181566.2 | 1e-114 | Integrase-type DNA-binding superfamily protein | ||||
Swissprot | Q9SIZ0 | 1e-115 | DRE2H_ARATH; Putative dehydration-responsive element-binding protein 2H | ||||
TrEMBL | A0A1P8B1T1 | 1e-111 | A0A1P8B1T1_ARATH; Integrase-type DNA-binding superfamily protein | ||||
STRING | AT2G40350.1 | 1e-113 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8532 | 25 | 38 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | AT2G40350.1 |
Entrez Gene | 818628 |
iHOP | AT2G40350 |
wikigenes | AT2G40350 |