PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vradi01g05770.1
Organism
Vigna radiata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 478aa    MW: 52344.2 Da    PI: 5.1158
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vradi01g05770.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.36.6e-1756100147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+
  Vradi01g05770.1  56 REKWTEEEHQKFLEALKLYGRG-WRQIEEHIG-TKTAVQIRSHAQKF 100
                      789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.96E-1650104IPR009057Homeodomain-like
PROSITE profilePS5129421.20151105IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.0E-1053107IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-1654103IPR006447Myb domain, plants
SMARTSM007174.5E-1355103IPR001005SANT/Myb domain
PfamPF002491.2E-145699IPR001005SANT/Myb domain
CDDcd001672.70E-1158101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MEMQDQIENT RSTISGSASN YHSNAGKQSE NVAHIPSVGN GHAPKARKPY TITKQREKWT  60
EEEHQKFLEA LKLYGRGWRQ IEEHIGTKTA VQIRSHAQKF FSKVVRESEG SAESSIQPIN  120
IPPPRPKRKP LHPYPRKSVD AFRGHAMPNE TETSQSTNLL VAEKDTPSPT SVLSTVGSEA  180
FGSAFSEQNN RCLSPNSCTT DIHSVSLSPV EKENDCMTSK ASEEEEKGSP ASVPLSIVSD  240
PNMCMKPEFS SKETEYVIDD SANMPQTTSI KLFGRTVSMV DNQKPQNIDD NVKAITVKSD  300
EVDDVGNEKP GQSTEQVDTQ LSLGLVGGNW SITITPDSDG ADRSEEPPKE NVCLGECVPD  360
ASFPQWSLYQ GLPAFCVSPC NKILNPMPLR PSLKVRAREE ESCCTGSNTE SVCDMENQGK  420
NSDAVDSKCE KYEGEGAAPQ KPARGFVPYK RCLAERDGNS LIATLEERDG QRARVCS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVradi01g05770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511774.10.0protein REVEILLE 7
RefseqXP_014511786.10.0protein REVEILLE 7
TrEMBLA0A1S3V0E60.0A0A1S3V0E6_VIGRR; protein REVEILLE 7
STRINGXP_007152597.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.12e-52MYB_related family protein