PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT1G18330.1 | ||||||||
Common Name | EPR1, F15H18.16, RVE7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | MYB_related | ||||||||
Protein Properties | Length: 346aa MW: 38350.7 Da PI: 7.9978 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.7 | 2.3e-17 | 50 | 94 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +W++eE++++++a+k++G g W+ I +++g ++t+ q++s+ qk+ AT1G18330.1 50 REKWSEEEHDRFLEAIKLYGRG-WRQIQEHIG-TKTAVQIRSHAQKF 94 789*******************.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 6.65E-16 | 44 | 98 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 19.768 | 45 | 99 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.4E-10 | 46 | 97 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 6.7E-16 | 48 | 97 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 5.2E-13 | 49 | 97 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.8E-15 | 50 | 93 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.64E-11 | 52 | 95 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MAAEDRSEEL SSNVENGSCN SNEGINPETS SHWIENVVKV RKPYTVTKQR EKWSEEEHDR 60 FLEAIKLYGR GWRQIQEHIG TKTAVQIRSH AQKFFSKMAQ EADSRSEGSV KAIVIPPPRP 120 KRKPAHPYPR KSPVPYTQSP PPNLSAMEKG TKSPTSVLSS FGSEDQVNRC SSPNSCTSDI 180 QSIGATSIDK KNNYTTSKQP FKDDSDIGST PISSITLFGK IVLVAEESHK PSSYNDDDLK 240 QMTCQENHYS GMLVDTNLSL GVWETFCTGS NAFGSVTEAS ENLEKSAEPI SSSWKRLSSL 300 EKQGSCNPVN ASGFRPYKRC LSEREVTSSL TLVASDEKKS QRARIC |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.27131 | 0.0 | flower| silique| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 261663_at | 0.0 | ||||
Expression Atlas | AT1G18330 | - | ||||
AtGenExpress | AT1G18330 | - | ||||
ATTED-II | AT1G18330 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
TAIR | EARLY-PHYTOCHROME-RESPONSIVE1 | |||||
UniProt | Transcription factor involved in phytochrome A-mediated cotyledon opening. Controlled by the central oscillator mediated by LHY and CCA1. Part of a regulatory circadian feedback loop. Regulates its own expression. {ECO:0000269|PubMed:14523250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00146 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT1G18330.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian-regulation. Peak of transcript abundance near subjective dawn. Up-regulated transiently by red light and far red light. {ECO:0000269|PubMed:14523250, ECO:0000269|PubMed:19805390}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Regulation -- ATRM (Manually Curated Upstream Regulators) ? help Back to Top | ||||||
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Source | Upstream Regulator (A: Activate/R: Repress) | |||||
ATRM | AT5G10140 (R) |
Regulation -- Hormone ? help Back to Top | ||||||
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Source | Hormone | |||||
AHD | ethylene |
Phenotype -- Disruption Phenotype ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DISRUPTION PHENOTYPE: No effect on the regulation of core clock associated genes or on the hypocotyl length. Rve1, rve2 and rve7 triple mutant has no alteration in the period or phase of the clock. {ECO:0000269|PubMed:19805390}. |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT1G18330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB115696 | 0.0 | AB115696.1 Arabidopsis thaliana EPR1 mRNA for MYB-related transcription factor EPR1, complete cds. | |||
GenBank | AY063952 | 0.0 | AY063952.1 Arabidopsis thaliana unknown protein (At1g18330) mRNA, complete cds. | |||
GenBank | AY114070 | 0.0 | AY114070.1 Arabidopsis thaliana unknown protein (At1g18330) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001117304.1 | 0.0 | Homeodomain-like superfamily protein | ||||
Refseq | NP_173269.1 | 0.0 | Homeodomain-like superfamily protein | ||||
Swissprot | B3H5A8 | 0.0 | RVE7_ARATH; Protein REVEILLE 7 | ||||
TrEMBL | D7KGC9 | 0.0 | D7KGC9_ARALL; Early-phytochrome-responsive1 | ||||
STRING | AT1G18330.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT1G18330.1 |
Entrez Gene | 838413 |
iHOP | AT1G18330 |
wikigenes | AT1G18330 |