PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Vang09g04480.1

Common Name

LR48_Vigan04g024900

Organism

Vigna angularis

Taxonomic ID

3914

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna

Family

bHLH

Protein Properties

Length: 458aa MW: 48381.4 Da PI: 6.732

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Vang09g04480.1	genome	SNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.9	6.4e-12	237	282	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq Vang09g04480.1 237 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 282 99*********************8.....6****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	3.30E-13	230	286	No hit	No description
SuperFamily	SSF47459	5.5E-17	230	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	17.39	232	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.9E-16	234	291	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-9	237	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.5E-13	238	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048767	Biological Process	root hair elongation
GO:0005634	Cellular Component	nucleus
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
TTTTTTTTAT NQIQNSHINH HHHQPLQHHH QLPHFDPTSQ DDFLDQMFSS CSWPDLNPNK 60 SLWDPNTLSD QTTPSDNDNT NNTNHNNVAF PYDEPSTLAS KFRNHQISAS STKNAAAALM 120 LQHQLLMSRD SPLLHMPLSL PQNDVVDASS FKSPNPGGET SVQALYNGFA GSLHGAGQAS 180 NQTQHFQHPQ GSSNPMQGQN FGAPVTGGAT NQAPASGAAA QPRQRVRARR GQATDPHSIA 240 ERLRRERIAE RMKALQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA 300 PLVADMSSEG GGDCIQANGN ANRGGSLAPN SNSNNNQTTA STSNDSLTMT EHQVAKLMEE 360 DMGSAMQYLQ GKGLCLMPIS LATAISTATC HTRNPLINAA SGSTQIPTNA APGTLVNPAV 420 ASNGEGPSSP SMSVLTVQSA VVGNEGAVKD AASVSKP*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

TTTTTTTTAT NQIQNSHINH HHHQPLQHHH QLPHFDPTSQ DDFLDQMFSS CSWPDLNPNK  60
SLWDPNTLSD QTTPSDNDNT NNTNHNNVAF PYDEPSTLAS KFRNHQISAS STKNAAAALM  120
LQHQLLMSRD SPLLHMPLSL PQNDVVDASS FKSPNPGGET SVQALYNGFA GSLHGAGQAS  180
NQTQHFQHPQ GSSNPMQGQN FGAPVTGGAT NQAPASGAAA QPRQRVRARR GQATDPHSIA  240
ERLRRERIAE RMKALQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGAAAVA  300
PLVADMSSEG GGDCIQANGN ANRGGSLAPN SNSNNNQTTA STSNDSLTMT EHQVAKLMEE  360
DMGSAMQYLQ GKGLCLMPIS LATAISTATC HTRNPLINAA SGSTQIPTNA APGTLVNPAV  420
ASNGEGPSSP SMSVLTVQSA VVGNEGAVKD AASVSKP*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	241	246	RLRRER

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00659	PBM	Transfer from Pp3c14_15890	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Vang09g04480.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015035	0.0	AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017422479.1	0.0	PREDICTED: transcription factor bHLH66-like
Swissprot	Q9ZUG9	2e-93	BH066_ARATH; Transcription factor bHLH66
TrEMBL	A0A0L9UBJ5	0.0	A0A0L9UBJ5_PHAAN; Uncharacterized protein
STRING	XP_007138416.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4778	33	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	1e-62	LJRHL1-like 1

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yang K, et al. Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication. Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8 [PMID:26460024] Zhang J, et al. Sperm cells are passive cargo of the pollen tube in plant fertilization. Nat Plants, 2017. 3: p. 17079 [PMID:28585562]