PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang01g12050.1
Common NameLR48_Vigan07g186400
Organism
Vigna angularis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family GATA
Protein Properties Length: 349aa    MW: 38575.6 Da    PI: 6.9164
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang01g12050.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA55.29.8e-18237271135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C +C t kTp+WR gp g+ktLCnaCG++y++ +l
  Vang01g12050.1 237 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRL 271
                     99*****************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169922.8E-828329IPR016679Transcription factor, GATA, plant
SMARTSM004011.9E-17231281IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.149231267IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-16232295No hitNo description
Gene3DG3DSA:3.30.50.101.9E-14233268IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.92E-14236283No hitNo description
PfamPF003201.3E-15237271IPR000679Zinc finger, GATA-type
PROSITE patternPS003440237262IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MESPNSSAIF PQFTLDTTKN NNPDHFIVED LLDFSNDDAV NADTIFDSLP VNSTDSSNVT  60
AVDSCNSSSF SGYDPNTIPD IGSRSLSDGH FSGDLCVPYD DIAELEWLSN FVEESFSSED  120
LQKMQLISGM NARNDHVPKA RGFPSEPTRN GFHSEPTRNN PIFNSEVSVP AKARSKRSRG  180
PPCNWASRLL VLSPTTSSSD TEVVAPVSTH SGTKKPAKTT PRKKDSGDGS GGDGRRCLHC  240
ATDKTPQWRT GPMGPKTLCN ACGVRYKSGR LVPEYRPAAS PTFVLTKHSN SHRKVLELRR  300
QKEMVRAQQH QQQQFLQHHH HQNMLLDVSN SEDYLVHQHV GPDYRQLI*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00048PBMTransfer from AT4G32890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapVang01g12050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150360.0AP015036.1 Vigna angularis var. angularis DNA, chromosome 3, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017428776.10.0PREDICTED: GATA transcription factor 12-like
SwissprotO826327e-94GATA9_ARATH; GATA transcription factor 9
TrEMBLA0A0L9UZ710.0A0A0L9UZ71_PHAAN; GATA transcription factor
STRINGXP_007140987.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.18e-89GATA transcription factor 12
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]