PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 678468225 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lentibulariaceae; Utricularia
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Family | TCP | ||||||||
Protein Properties | Length: 248aa MW: 27849.3 Da PI: 7.477 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 103.3 | 4e-32 | 30 | 110 | 2 | 78 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec....eaess 78 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl++ak++i+el+ ++ ++ s++ ++++ 678468225 30 FGGKDRHSKVCTVRGLRDRRVRLSVQTAIQVYDLQDRLGLSQPSKVVDWLLNAAKHEIDELPPLQMPQGSSTyfrsLDHHH 110 689*************************************************************77666555443322222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 31.686 | 32 | 90 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.0E-29 | 32 | 111 | IPR005333 | Transcription factor, TCP |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045962 | Biological Process | positive regulation of development, heterochronic |
Sequence ? help Back to Top |
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Protein Sequence Length: 248 aa Download sequence Send to blast |
MTSCGEGKPS AMPSWAMLKD PRIVRVSRAF GGKDRHSKVC TVRGLRDRRV RLSVQTAIQV 60 YDLQDRLGLS QPSKVVDWLL NAAKHEIDEL PPLQMPQGSS TYFRSLDHHH EAIGSGPNLN 120 PDLEKLKEMA PGFNPFERWD PSSLTLSHPP RSFDFPSEHH QDLHEIGVMQ WTSAHVYQHG 180 GPWLPSPPFD SKPLNLQVGS QISNVSLASS VDSGARTVRP FNFNMTADLL HFHNKIEDER 240 HTNGYCSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 9e-19 | 37 | 91 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 9e-19 | 37 | 91 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00008 | PBM | Transfer from 496250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 678468225 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015064545.1 | 3e-59 | transcription factor TCP17 isoform X1 | ||||
Swissprot | Q9LEZ9 | 8e-42 | TCP17_ARATH; Transcription factor TCP17 | ||||
TrEMBL | G3BGU5 | 3e-57 | G3BGU5_SOLLC; TCP transcription factor 5 | ||||
STRING | Solyc02g089020.1.1 | 4e-58 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA821 | 24 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08070.1 | 3e-44 | TCP domain protein 17 |
Publications ? help Back to Top | |||
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