PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

496250

Common Name

ARALYDRAFT_496250

Organism

Arabidopsis lyrata

Taxonomic ID

81972

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis

Family

TCP

Protein Properties

Length: 331aa MW: 36680.2 Da PI: 7.6097

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
496250	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	96.5	5.1e-30	34	145	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........................ssssaseceaesssss 81 g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk i+WLl++ak +++l+ + s s ss 496250 34 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVIDWLLEAAKDDVDKLPPLqfphgfnqmypnlifgnsgfgespS-----------SASS 125 78*************************************************************5555555444444444444332220...........2222 PP TCP 82 asnsssg............k 89 +++++ + + 496250 126 TAFPGTNlgflenwdlggsS 145 22222223344444444321 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	9.8E-28	35	155	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	29.789	35	93	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009965	Biological Process	leaf morphogenesis
GO:0030154	Biological Process	cell differentiation
GO:0045962	Biological Process	positive regulation of development, heterochronic

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MLQQQRPSSV SSSSRQWTSA FRNPRIVRVS RTFGGKDRHS KVCTVRGLRD RRIRLSVPTA 60 IQLYDLQDRL GLSQPSKVID WLLEAAKDDV DKLPPLQFPH GFNQMYPNLI FGNSGFGESP 120 SSASSTAFPG TNLGFLENWD LGGSSRTRSR LTDTTTTQRE SFDLDKGKWI KHDENSNQDH 180 QGFDTNHQHF PLTNPYNNTS SYYNLGHLQQ SLDQSGNNVT VAISNVAANN NNNLNLPPPS 240 SSAGDGSQLF FGPTPPAMSS LFPTYPSFLG ASHHHHHVVD GAGHLQLFST NSNTASQQQL 300 ITGNTSLIRP FHHLMSSNHD TDRHSSDNES D

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5zkt_A	3e-19	40	94	1	55	Putative transcription factor PCF6
5zkt_B	3e-19	40	94	1	55	Putative transcription factor PCF6
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Functional Description ? help Back to Top
Source	Description
UniProt	Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269\|PubMed:17307931, ECO:0000269\|PubMed:25378179}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00008	PBM	25215497	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	496250

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB008269	0.0	AB008269.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MSL3.
GenBank	BT029489	0.0	BT029489.1 Arabidopsis thaliana At5g60970 mRNA, complete cds.
GenBank	CP002688	0.0	CP002688.1 Arabidopsis thaliana chromosome 5 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020878514.1	0.0	transcription factor TCP5
Swissprot	Q9FME3	0.0	TCP5_ARATH; Transcription factor TCP5
TrEMBL	D7MUG0	0.0	D7MUG0_ARALL; Uncharacterized protein (Fragment)
STRING	fgenesh2_kg.8__2066__AT5G60970.1	0.0	(Arabidopsis lyrata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3576	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60970.1	1e-151	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5

Link Out ? help Back to Top
Phytozome	496250
Entrez Gene	9302481

Publications ? help Back to Top
Koyama T,Sato F,Ohme-Takagi M Roles of miR319 and TCP Transcription Factors in Leaf Development. Plant Physiol., 2017. 175(2): p. 874-885 [PMID:28842549]