PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA8862 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | TCP | ||||||||
Protein Properties | Length: 298aa MW: 32614.9 Da PI: 9.8713 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 132.1 | 5.1e-41 | 47 | 163 | 2 | 115 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnss 86 a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqq++p+i+++tgt++++as+ ++ s+ ++++ss Tp57577_TGAC_v2_mRNA8862 47 APKRTSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQSEPSIIAATGTGTIPASALSSTSNTLTNQASS 131 789******************************************************************8885555555555444 PP TCP 87 sg......kaaksaakskksqksaasalnlakesr 115 + + + ++a+++++q++a ++ ++ s+ Tp57577_TGAC_v2_mRNA8862 132 LSsglqldRTNWAQAHQQQAQQQA---HQAHHVSS 163 445676652222222333333333...33343333 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.5E-31 | 51 | 160 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 28.171 | 53 | 107 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008361 | Biological Process | regulation of cell size | ||||
GO:1900056 | Biological Process | negative regulation of leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000987 | Molecular Function | core promoter proximal region sequence-specific DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MDPKTSKQTQ LSNMGENKQQ SDSKNLQIVL SETNNNSKDS ETKKQLAPKR TSNKDRHTKV 60 EGRGRRIRMP ALCAARIFQL TRELGHKSDG ETIQWLLQQS EPSIIAATGT GTIPASALSS 120 TSNTLTNQAS SLSSGLQLDR TNWAQAHQQQ AQQQAHQAHH VSSSSLWPHG FGFQQSSSTS 180 ENNSSNYFQK IGFSGFDMPT SATNLGGMSF TSILGGNQQM PGLELGLSQD GHIGVLNQQA 240 LTQIYQQIGQ NQNRVQQQNQ QNPTKDDSQS SGQGVQGFKY KVELDGERYR IVGLVWP* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00636 | PBM | Transfer from Glyma.19G095300 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA8862 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003622139.1 | 1e-143 | transcription factor TCP20 | ||||
Swissprot | Q9LSD5 | 3e-72 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2K3N3I4 | 0.0 | A0A2K3N3I4_TRIPR; Teosinte branched 1 | ||||
STRING | AES78357 | 1e-142 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-66 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA8862 |