PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24904
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 478aa    MW: 52821 Da    PI: 5.6978
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24904genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding513.3e-1656100147
                                TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                r +WT eE++++++a k++G g W+ I +++g  +t+ q++s+ qk+
  Tp57577_TGAC_v2_mRNA24904  56 REKWTDEEHQKFLEALKLYGRG-WRQIEEHIG-SKTAVQIRSHAQKF 100
                                789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.91E-1650104IPR009057Homeodomain-like
PROSITE profilePS5129420.43751105IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-953103IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-1654103IPR006447Myb domain, plants
SMARTSM007171.5E-1255103IPR001005SANT/Myb domain
PfamPF002491.4E-135699IPR001005SANT/Myb domain
CDDcd001671.51E-1058101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MLLLGMKQEQ VEGTISKCNS KGGSQSENVA KTQDIPSVAN NLTPKVRKPY TITKQREKWT  60
DEEHQKFLEA LKLYGRGWRQ IEEHIGSKTA VQIRSHAQKF FSKVVREPDG SAESSMQPID  120
IPPPRPKRKP LHPYPRKSID SFKGQSAPNE SETSPSINLS VAENDTQSPT SVLSAHGSEA  180
FGSAAFSEQT NRCLSPNSCT TEIHPVSLSP VEKENDSQTS KPSEEEEKGS PALVPLSTDS  240
KPLMCLKSEM ISSEETQCFR EDAANMPHIT CIKLFGRTVS MVGTEKSIND DDENIKPIAI  300
KSDEIVENEK VGQEAVSEQL DTQLSLSTCR ANLHIIPDEA QMRSTEQPKD NLYVGGAASL  360
PLWSLYQGLP SFNLKPCNHE IINPVPLRPS LKIRTREEES SCTGSNTESV CDMENQSKNN  420
SSDTDDSQSQ KHHQEGVVIK KSGRGFVPYK RCLAERDENS LIVGLEEREG QRARVCS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24904
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1480931e-137BT148093.1 Medicago truncatula clone JCVI-FLMt-21K2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013452818.10.0protein REVEILLE 7 isoform X1
TrEMBLA0A2K3N2700.0A0A2K3N270_TRIPR; MYB transcription factor
STRINGXP_004515250.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF73133244
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.11e-51MYB_related family protein