PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp4g29400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB_related | ||||||||
Protein Properties | Length: 298aa MW: 32783 Da PI: 4.3029 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29.1 | 2.3e-09 | 3 | 27 | 23 | 48 |
-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 23 tWktIartmgkgRtlkqcksrwqkyl 48 +W++Ia++++ gRt++++k++w+++l Tp4g29400 3 RWSLIANHLP-GRTDNEIKNYWNSHL 27 4*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.409 | 1 | 31 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-12 | 3 | 27 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.5E-7 | 3 | 27 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.75E-7 | 3 | 27 | No hit | No description |
SuperFamily | SSF46689 | 1.14E-7 | 3 | 31 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009813 | Biological Process | flavonoid biosynthetic process | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MVRWSLIANH LPGRTDNEIK NYWNSHLSRK LHNFIRKPSI SYDVPAVIMN APPTSSSRPP 60 AKRRTGRTSR SAMKPKAHNP KTLKTKKTSA PPEPDADVAV KRVAGEEALM MELSGAEAEL 120 GPCDYYGACH EGGDFCNNNN DNNLTSINGH DGVLSFDDAD IIDLLLDESD PGLVFTSCGE 180 DAELNHLGDS VLARGFSETS NQGSLECLQS CPSVESFLNY EHHQVNDALT DEFIDWDCVW 240 QEGNSNNNLC DEKEGSDSMV SWLLDGEDDA TIGKTNSENF GEPLDHDEEN ALVAWLLS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis mainly in the root (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:15923334, ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp4g29400 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By nitrogen deficiency, sucrose and UV LIGHT (PubMed:17053893, PubMed:9839469). Triggered by HY5 in response to light and UV-B (PubMed:19895401). {ECO:0000269|PubMed:17053893, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018473927.1 | 1e-146 | PREDICTED: transcription factor MYB12-like | ||||
Swissprot | O22264 | 1e-123 | MYB12_ARATH; Transcription factor MYB12 | ||||
TrEMBL | V4LHW8 | 1e-144 | V4LHW8_EUTSA; Uncharacterized protein | ||||
STRING | XP_006397940.1 | 1e-145 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-120 | myb domain protein 12 |