PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp3g16060
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family B3
Protein Properties Length: 272aa    MW: 30949.7 Da    PI: 5.7355
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp3g16060genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.63.3e-11291111299
                HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ++++ ++p +f+++  +  + +  +++  ++++sW++ l ++ k+g ++ ++ W eFv++n L   D++vF++++++ f   v++f+k
  Tp3g16060  29 SKSMRIIPEEFLRSTRE--AFEHRVVFSVRWNNSWQLWL-HQDKKGLFMVKEDWDEFVDDNLLGPDDILVFTHQDTMFF--EVQIFKK 111
                3456799*****99963..45568***************.4555556*************************9887888..9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.6E-1412113IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-1414112IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.2E-1317112IPR003340B3 DNA binding domain
PROSITE profilePS5086310.78518112IPR003340B3 DNA binding domain
PfamPF023624.3E-929111IPR003340B3 DNA binding domain
CDDcd100171.55E-929110No hitNo description
SuperFamilySSF1019362.35E-9171256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-7172258IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.032178271IPR003340B3 DNA binding domain
PROSITE profilePS513008.625233272IPR017881Nitrite reductase [NAD(P)H] large subunit, NirD bacterial-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0008942Molecular Functionnitrite reductase [NAD(P)H] activity
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MLPESETQEN LSKPSSFSKS LSSGQNWKSK SMRIIPEEFL RSTREAFEHR VVFSVRWNNS  60
WQLWLHQDKK GLFMVKEDWD EFVDDNLLGP DDILVFTHQD TMFFEVQIFK KDGKEIISAP  120
LEVEPETEPF HPKPHDSHQE TDPASVSATG GTTGRGRRGG AHVENPERYL VNPENPYFTK  180
TLTKTNHVLY VSHLVIAEYN LEFGPQNSTM HFLLPDGKKL DGLNKIYGNS HAFLGWAAVC  240
RDYNLKQGST VVCELELSGG VVAAVRVHFV DE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00528DAPTransfer from AT5G25475Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp3g16060
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009113621.11e-140PREDICTED: B3 domain-containing protein At5g25470-like isoform X2
RefseqXP_009113624.11e-140PREDICTED: B3 domain-containing protein At5g25470-like isoform X2
RefseqXP_018510844.11e-140PREDICTED: B3 domain-containing protein At5g25470-like isoform X1
SwissprotQ680D91e-119Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A3P5ZG111e-139A0A3P5ZG11_BRACM; Uncharacterized protein
STRINGBra021284.1-P1e-139(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25475.31e-109B3 family protein