PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G25475.4
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 324aa    MW: 37205.8 Da    PI: 9.8087
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G25475.4genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.31.7e-10781551799
                  E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++p +f+++  g    +  +++  ++ +sW++ l  ++ +++ +++++ W+eFv++n+L  +D + +k+d  ++ +l v++f++
  AT5G25475.4  78 IIPEDFVRRTRGA--FEHRVVFSVRWENSWQLWL--EREKNElFMIEEDWNEFVDDNHLGPNDNLFIKHD--ETMNLEVQIFKN 155
                  799****999666..3446***************..8888888*************************65..566669999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.8E-131634IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.51862156IPR003340B3 DNA binding domain
SMARTSM010191.0E-1167156IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-1276157IPR015300DNA-binding pseudobarrel domain
PfamPF023627.9E-977155IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-1378157IPR015300DNA-binding pseudobarrel domain
CDDcd100171.15E-778154No hitNo description
SuperFamilySSF1019361.73E-9222310IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-7223318IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-10229324IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MLPKNAIEKI QANVSKPCFW KSLSPGQTWK SKSMLPLWVL LRRRFRLPLA HKVITFSLMF  60
PLLNVSIVLL ISGFIKRIIP EDFVRRTRGA FEHRVVFSVR WENSWQLWLE REKNELFMIE  120
EDWNEFVDDN HLGPNDNLFI KHDETMNLEV QIFKNNGVEI IDVPLGVEPE TEPFHPTPKK  180
PHKETTPASS FASGSGCSAN GGTNGRGKQR SSDVKNPERY LLNPENPYFV QAVTKRNDVL  240
YVSRPVVQSY RLKFGPVKST ITYLLPGEKK EEGENRIYNG KPCFSGWSVL CRRHNLNIGD  300
SVVCELERSG GVVTAVRVHF VKKD
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible246906_at0.0
Expression AtlasAT5G25475-
AtGenExpressAT5G25475-
ATTED-IIAT5G25475-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00528DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G25475.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G25475
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1759280.0AK175928.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-59-D02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001190395.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ680D90.0Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLF4JWT60.0F4JWT6_ARATH; AP2/B3-like transcriptional factor family protein
STRINGAT5G25475.40.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM44911645
Publications ? help Back to Top
  1. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]