PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G25475.3
Common NameT14C9.1
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family B3
Protein Properties Length: 282aa    MW: 32291.6 Da    PI: 8.7036
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G25475.3genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.34.3e-11311131299
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++++ ++p +f+++  g    +  +++  ++ +sW++ l  ++ +++ +++++ W+eFv++n+L  +D + +k+d  ++ +l v++f++
  AT5G25475.3  31 SKSMRIIPEDFVRRTRGA--FEHRVVFSVRWENSWQLWL--EREKNElFMIEEDWNEFVDDNHLGPNDNLFIKHD--ETMNLEVQIFKN 113
                  3456699******99666..4447***************..8888888*************************65..566669999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.75E-1513115IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-1515115IPR015300DNA-binding pseudobarrel domain
CDDcd100173.39E-1117112No hitNo description
SMARTSM010198.6E-1719114IPR003340B3 DNA binding domain
PROSITE profilePS5086310.75720114IPR003340B3 DNA binding domain
PfamPF023622.2E-931113IPR003340B3 DNA binding domain
SuperFamilySSF1019361.29E-9180268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.4E-8181276IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.2E-10187282IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MLPKNAIEKI QANVSKPCFW KSLSPGQTWK SKSMRIIPED FVRRTRGAFE HRVVFSVRWE  60
NSWQLWLERE KNELFMIEED WNEFVDDNHL GPNDNLFIKH DETMNLEVQI FKNNGVEIID  120
VPLGVEPETE PFHPTPKKPH KETTPASSFA SGSGCSANGG TNGRGKQRSS DVKNPERYLL  180
NPENPYFVQA VTKRNDVLYV SRPVVQSYRL KFGPVKSTIT YLLPGEKKEE GENRIYNGKP  240
CFSGWSVLCR RHNLNIGDSV VCELERSGGV VTAVRVHFVK KD
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible246906_at0.0
Expression AtlasAT5G25475-
AtGenExpressAT5G25475-
ATTED-IIAT5G25475-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00528DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G25475.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Interaction ? help Back to Top
Source Intact With
IntActSearch Q680D9
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G25475
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1759280.0AK175928.1 Arabidopsis thaliana mRNA, complete cds, clone: RAFL22-59-D02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001078620.10.0AP2/B3-like transcriptional factor family protein
RefseqNP_568473.10.0AP2/B3-like transcriptional factor family protein
RefseqNP_851075.10.0AP2/B3-like transcriptional factor family protein
SwissprotQ680D90.0Y5475_ARATH; B3 domain-containing protein At5g25475
TrEMBLA0A178UA830.0A0A178UA83_ARATH; Uncharacterized protein
STRINGAT5G25475.40.0(Arabidopsis thaliana)
Publications ? help Back to Top
  1. Seki M, et al.
    Functional annotation of a full-length Arabidopsis cDNA collection.
    Science, 2002. 296(5565): p. 141-5
    [PMID:11910074]
  2. Yamada K, et al.
    Empirical analysis of transcriptional activity in the Arabidopsis genome.
    Science, 2003. 302(5646): p. 842-6
    [PMID:14593172]
  3. Swaminathan K,Peterson K,Jack T
    The plant B3 superfamily.
    Trends Plant Sci., 2008. 13(12): p. 647-55
    [PMID:18986826]
  4. Arabidopsis Interactome Mapping Consortium
    Evidence for network evolution in an Arabidopsis interactome map.
    Science, 2011. 333(6042): p. 601-7
    [PMID:21798944]