PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp3g00520 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
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Family | MYB | ||||||||
Protein Properties | Length: 202aa MW: 23280.4 Da PI: 10.3599 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52 | 1.7e-16 | 25 | 72 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l ++ +G g W+t+a+ g++Rt+k+c++rw++yl Tp3g00520 25 KGPWTMEEDLILFSYILNHGEGLWNTVAKASGLKRTGKSCRLRWLNYL 72 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 55.2 | 1.7e-17 | 78 | 121 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ ++eE++l+++++++lG++ W++Ia++++ gRt++++k++w++ Tp3g00520 78 RGNISAEEQLLIIQLHAKLGNR-WSKIAKHLP-GRTDNEIKNFWRT 121 7899******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.593 | 20 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.87E-29 | 23 | 119 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 7.4E-12 | 24 | 74 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.2E-14 | 25 | 72 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-21 | 26 | 79 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.84E-8 | 27 | 72 | No hit | No description |
PROSITE profile | PS51294 | 24.792 | 73 | 127 | IPR017930 | Myb domain |
SMART | SM00717 | 4.3E-16 | 77 | 125 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-16 | 78 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-24 | 80 | 127 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 4.03E-12 | 82 | 121 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:0080086 | Biological Process | stamen filament development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 202 aa Download sequence Send to blast |
MKKTGRGKQR ITSHSQKEEE GTVRKGPWTM EEDLILFSYI LNHGEGLWNT VAKASGLKRT 60 GKSCRLRWLN YLRPDVRRGN ISAEEQLLII QLHAKLGNRW SKIAKHLPGR TDNEIKNFWR 120 TKIQRHIKLS SSSSSSENMN IRQSPVMTTT DQGSSSKAFD MAESFISPTP FHVMEQSNDS 180 YWNVEDLWPV HLLNGDHQHQ LI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 1e-26 | 25 | 127 | 27 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting redundantly with MYB21 and MYB24 to control stamen filament elongation in the late developed flowers. Repressed at the transcript levels by DELLA proteins. {ECO:0000269|PubMed:19325888}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00324 | DAP | Transfer from AT3G01530 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp3g00520 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK118091 | 1e-154 | AK118091.1 Arabidopsis thaliana At3g01530 mRNA for putative transcription factor, complete cds, clone: RAFL19-34-G03. | |||
GenBank | AY088761 | 1e-154 | AY088761.1 Arabidopsis thaliana clone 94595 mRNA, complete sequence. | |||
GenBank | AY519582 | 1e-154 | AY519582.1 Arabidopsis thaliana MYB transcription factor (At3g01530) mRNA, complete cds. | |||
GenBank | BT005574 | 1e-154 | BT005574.1 Arabidopsis thaliana clone U50886 putative myb family transcription factor (At3g01530) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013585517.1 | 1e-115 | PREDICTED: transcription factor MYB57-like | ||||
Swissprot | Q9SSA1 | 1e-105 | MYB57_ARATH; Transcription factor MYB57 | ||||
TrEMBL | A0A078IJ11 | 1e-114 | A0A078IJ11_BRANA; BnaC05g48910D protein | ||||
STRING | Bo5g155050.1 | 1e-113 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01530.1 | 1e-106 | myb domain protein 57 |