PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp2g26380
Organism
Thellungiella parvula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassicaceae incertae sedis; Schrenkiella
Family C3H
Protein Properties Length: 440aa    MW: 48826.1 Da    PI: 6.8189
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp2g26380genomethellungiellaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.94e-14107129426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                e C+f++rtG CkyG++CkF+H+
  Tp2g26380 107 EDCSFYMRTGSCKYGSSCKFNHP 129
                89********************9 PP
2zf-CCCH29.89.9e-10155175525
                --SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                +C++++rtG CkyG++C+F+H
  Tp2g26380 155 ECKYYFRTGGCKYGETCRFSH 175
                6******************** PP
3zf-CCCH37.53.9e-12198222226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C+f++r+G Ck+G+ CkF+H+
  Tp2g26380 198 GEKECPFYMRNGSCKFGGDCKFNHP 222
                7899********************9 PP
4zf-CCCH18.44e-06341366227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                ++++C+++ +tG Ck+  +Ck++H++
  Tp2g26380 341 DQPECSYYVKTGDCKFKYKCKYHHPK 366
                689*********************96 PP
5zf-CCCH32.11.9e-10389411426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                  C +++r+G+Ck+G+ C+F H+
  Tp2g26380 389 NMCTHYSRYGICKFGPACRFDHS 411
                67********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.28E-6101131IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.159103131IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6103130IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-11107129IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-6109128IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.699150178IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-4150177IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-6151179IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-7155175IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5156178IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.601196224IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6196223IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6198223IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-10198222IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.577339367IPR000571Zinc finger, CCCH-type
SMARTSM003560.076339366IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-5343369IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.971385413IPR000571Zinc finger, CCCH-type
SMARTSM003560.0078385412IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-6386413IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4390411IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-7391411IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MSKPEEFPDP NPAIPDPKPP SRSSSDNDPA ADRAPSDLNH ISEELTDNLR NVSLDENTKE  60
VTGVPISVSE GNGETGSKEG SEEGGGRESE STVEKRMIVY PVRPDAEDCS FYMRTGSCKY  120
GSSCKFNHPV RRKLQIGREK VREREADVEN PRLMECKYYF RTGGCKYGET CRFSHTKEQT  180
SLASRPELNF LGLPIRPGEK ECPFYMRNGS CKFGGDCKFN HPDPTAIGGV DSPLFRGTNG  240
GSVGSFSPKD APQASSTSWS SSRHMNGTGT APFIPVMYSQ NRGVSPQTPE WNGYQAPSVY  300
PPERSVLPPS TYPANNSLGE TSSFSQFQPQ MPVEEFPERP DQPECSYYVK TGDCKFKYKC  360
KYHHPKNRLP KQIPSSFNDK GLPLRPDQNM CTHYSRYGIC KFGPACRFDH SIPPTFSSSS  420
SQTVEVPQVG GKGDENDSWH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAPTransfer from AT5G63260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp2g26380
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394295.10.0zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLV4MJP00.0V4MJP0_EUTSA; Uncharacterized protein
STRINGXP_006394295.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.10.0C3H family protein