PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT5G63260.1 | ||||||||
Common Name | MDC12.23 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 435aa MW: 48606.7 Da PI: 6.6864 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 44.4 | 2.8e-14 | 103 | 127 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 + e C+f++rtG CkyG++CkF+H+ AT5G63260.1 103 DSEDCSFYMRTGSCKYGSSCKFNHP 127 5699********************9 PP | |||||||
2 | zf-CCCH | 34 | 4.8e-11 | 153 | 174 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++++rtG CkyG++C+F+H AT5G63260.1 153 ECKYYFRTGGCKYGESCRFSHM 174 6********************6 PP | |||||||
3 | zf-CCCH | 38.9 | 1.4e-12 | 196 | 220 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C+f++r+G Ck+G+ CkF+H+ AT5G63260.1 196 GEKECPFYMRNGSCKFGSDCKFNHP 220 7899********************9 PP | |||||||
4 | zf-CCCH | 19.9 | 1.3e-06 | 336 | 361 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++++tG Ck+ +Ck++H++ AT5G63260.1 336 DQPECTYYLKTGDCKFKYKCKYHHPK 361 689*********************96 PP | |||||||
5 | zf-CCCH | 32.9 | 1.1e-10 | 382 | 406 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 +++ C +++r+G+Ck+G+ C+F H+ AT5G63260.1 382 DQSMCTHYSRYGICKFGPACRFDHS 406 5678********************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF90229 | 8.9E-7 | 98 | 129 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.338 | 101 | 129 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.9E-6 | 101 | 128 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-11 | 103 | 127 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.7E-6 | 107 | 126 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.68 | 148 | 176 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 7.0E-5 | 148 | 175 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.22E-6 | 148 | 176 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-8 | 153 | 174 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 2.9E-6 | 154 | 175 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 16.286 | 194 | 222 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 1.4E-6 | 194 | 221 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 4.71E-6 | 196 | 221 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 3.9E-10 | 196 | 220 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-4 | 200 | 219 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.112 | 334 | 362 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.079 | 334 | 361 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.8E-5 | 338 | 364 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.44 | 340 | 360 | No hit | No description |
PROSITE profile | PS50103 | 14.906 | 380 | 408 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.019 | 380 | 407 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.54E-6 | 381 | 408 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 9.2E-5 | 384 | 406 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-7 | 386 | 406 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008150 | Biological Process | biological_process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000084 | anatomy | plant sperm cell | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001017 | developmental stage | M germinated pollen stage | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 435 aa Download sequence Send to blast |
MSKPEETSDP NPTGPDPSRS SSDEVTVTVA DRAPSDLNHV SEELSDQLRN VGLDDSAKEL 60 SVPISVPQGN VETDSRALFG SDQKEEEEGS EKRMMMVYPV RPDSEDCSFY MRTGSCKYGS 120 SCKFNHPVRR KLQIGRERVR ERDEDVENPK LMECKYYFRT GGCKYGESCR FSHMKEHNSP 180 ASVPELNFLG LPIRPGEKEC PFYMRNGSCK FGSDCKFNHP DPTAIGGVDS PLYRGNNGGS 240 FSPKAPSQAS STSWSSTRHM NGTGTAPFIP SMFPHSRGVT PQASDWNGYQ ASSAYPPERS 300 PLAPSSYQVN NSLAETSSFS QYQHQMSVEE FPERPDQPEC TYYLKTGDCK FKYKCKYHHP 360 KNRLPKQAAF SFNDKGLPLR PDQSMCTHYS RYGICKFGPA CRFDHSIPPT FSPSSSQTVE 420 ARQVGANGNE DDSWH |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.43350 | 0.0 | bud| flower |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
Genevisible | 247366_at | 0.0 | ||||
Expression Atlas | AT5G63260 | - | ||||
AtGenExpress | AT5G63260 | - | ||||
ATTED-II | AT5G63260 | - |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00582 | DAP | 27203113 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT5G63260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT5G63260 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228790 | 0.0 | AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_201131.1 | 0.0 | Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||
Swissprot | Q5RJC5 | 0.0 | C3H67_ARATH; Zinc finger CCCH domain-containing protein 67 | ||||
TrEMBL | A0A178UBV5 | 0.0 | A0A178UBV5_ARATH; Uncharacterized protein | ||||
STRING | AT5G63260.2 | 0.0 | (Arabidopsis thaliana) |
Link Out ? help Back to Top | |
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Phytozome | AT5G63260.1 |
Entrez Gene | 836446 |
iHOP | AT5G63260 |
wikigenes | AT5G63260 |
Publications ? help Back to Top | |||
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