PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G63260.2
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family C3H
Protein Properties Length: 451aa    MW: 50503.9 Da    PI: 6.9533
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G63260.2genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH44.32.9e-14103127226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  + e C+f++rtG CkyG++CkF+H+
  AT5G63260.2 103 DSEDCSFYMRTGSCKYGSSCKFNHP 127
                  5699********************9 PP
2zf-CCCH345e-11169190526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C++++rtG CkyG++C+F+H 
  AT5G63260.2 169 ECKYYFRTGGCKYGESCRFSHM 190
                  6********************6 PP
3zf-CCCH38.81.5e-12212236226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  ++++C+f++r+G Ck+G+ CkF+H+
  AT5G63260.2 212 GEKECPFYMRNGSCKFGSDCKFNHP 236
                  7899********************9 PP
4zf-CCCH19.81.4e-06352377227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  ++++C ++++tG Ck+  +Ck++H++
  AT5G63260.2 352 DQPECTYYLKTGDCKFKYKCKYHHPK 377
                  689*********************96 PP
5zf-CCCH32.91.1e-10398422226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C +++r+G+Ck+G+ C+F H+
  AT5G63260.2 398 DQSMCTHYSRYGICKFGPACRFDHS 422
                  5678********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902299.94E-798129IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.338101129IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-6101128IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-11103127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-6107126IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68164192IPR000571Zinc finger, CCCH-type
SMARTSM003567.0E-5164191IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6164192IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-8169190IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.0E-6170191IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.286210238IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-6210237IPR000571Zinc finger, CCCH-type
PfamPF006424.1E-10212236IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-6212237IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4216235IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.112350378IPR000571Zinc finger, CCCH-type
SMARTSM003560.079350377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5354380IPR000571Zinc finger, CCCH-type
PfamPF146080.45356376No hitNo description
PROSITE profilePS5010314.906396424IPR000571Zinc finger, CCCH-type
SMARTSM003560.019396423IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-6397424IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.6E-5400422IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-7402422IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008150Biological Processbiological_process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000013anatomycauline leaf
PO:0000037anatomyshoot apex
PO:0000084anatomyplant sperm cell
PO:0000230anatomyinflorescence meristem
PO:0000293anatomyguard cell
PO:0008019anatomyleaf lamina base
PO:0009005anatomyroot
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009029anatomystamen
PO:0009030anatomycarpel
PO:0009031anatomysepal
PO:0009032anatomypetal
PO:0009046anatomyflower
PO:0009047anatomystem
PO:0009052anatomyflower pedicel
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0020100anatomyhypocotyl
PO:0020137anatomyleaf apex
PO:0025022anatomycollective leaf structure
PO:0025281anatomypollen
PO:0001017developmental stageM germinated pollen stage
PO:0001054developmental stagevascular leaf senescent stage
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0001185developmental stageplant embryo globular stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007064developmental stageLP.12 twelve leaves visible stage
PO:0007095developmental stageLP.08 eight leaves visible stage
PO:0007098developmental stageLP.02 two leaves visible stage
PO:0007103developmental stageLP.10 ten leaves visible stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007123developmental stageLP.06 six leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
PO:0007616developmental stageflowering stage
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MSKPEETSDP NPTGPDPSRS SSDEVTVTVA DRAPSDLNHV SEELSDQLRN VGLDDSAKEL  60
SVPISVPQGN VETDSRALFG SDQKEEEEGS EKRMMMVYPV RPDSEDCSFY MRTGSCKYGS  120
SCKFNHPVRR KLQDLKFLGS MRTRNGKEYI GRERVRERDE DVENPKLMEC KYYFRTGGCK  180
YGESCRFSHM KEHNSPASVP ELNFLGLPIR PGEKECPFYM RNGSCKFGSD CKFNHPDPTA  240
IGGVDSPLYR GNNGGSFSPK APSQASSTSW SSTRHMNGTG TAPFIPSMFP HSRGVTPQAS  300
DWNGYQASSA YPPERSPLAP SSYQVNNSLA ETSSFSQYQH QMSVEEFPER PDQPECTYYL  360
KTGDCKFKYK CKYHHPKNRL PKQAAFSFND KGLPLRPDQS MCTHYSRYGI CKFGPACRFD  420
HSIPPTFSPS SSQTVEARQV GANGNEDDSW H
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
At.433500.0bud| flower
Expression -- Microarray ? help Back to Top
Source ID E-value
Genevisible247366_at0.0
Expression AtlasAT5G63260-
AtGenExpressAT5G63260-
ATTED-IIAT5G63260-
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00582DAP27203113Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G63260.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G63260
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2287900.0AK228790.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-10-O16.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001190604.10.0Zinc finger C-x8-C-x5-C-x3-H type family protein
SwissprotQ5RJC50.0C3H67_ARATH; Zinc finger CCCH domain-containing protein 67
TrEMBLF4K9A60.0F4K9A6_ARATH; Zinc finger C-x8-C-x5-C-x3-H type family protein
STRINGAT5G63260.20.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41762758
Representative plantOGRP9141714
Publications ? help Back to Top
  1. Delaney KJ, et al.
    Calmodulin interacts with and regulates the RNA-binding activity of an Arabidopsis polyadenylation factor subunit.
    Plant Physiol., 2006. 140(4): p. 1507-21
    [PMID:16500995]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]