PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010558436.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 364aa MW: 40552 Da PI: 4.6364 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.2e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+eEde+l + ++ G g+W++ +++ g+ R++k+c++rw +yl XP_010558436.1 14 RGRWTAEEDEILTKFIQANGEGSWRSLPKKAGLLRCGKSCRLRWINYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.7 | 4e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ T +E+e++v++++ G++ W++Ia +++ gRt++++k++w+++l XP_010558436.1 67 RGNITSQEEEIIVKLHNAIGNR-WSLIATYLP-GRTDNEIKNYWNSHL 112 7999******************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.0E-21 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.74 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.03E-28 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-12 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.5E-14 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.13E-8 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 23.265 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-24 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.8E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.0E-14 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.38E-9 | 71 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0051555 | Biological Process | flavonol biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 364 aa Download sequence Send to blast |
MGRAPCCEKV GLKRGRWTAE EDEILTKFIQ ANGEGSWRSL PKKAGLLRCG KSCRLRWINY 60 LRTDLKRGNI TSQEEEIIVK LHNAIGNRWS LIATYLPGRT DNEIKNYWNS HLSRKVYTFT 120 NTKPGDDTSL ILDEIISKTS SSSSSCNQKK KRKKKGRTSR SEMKKHKQMV ASSTQMKTTG 180 TPSFAVEVPG DPLFGEDKTC PDGESGQGSE ISEKGQMGHS EEDSLGPYEW LDNEIERLMM 240 SSCVWEGEEV VIGFNGTEFQ DKIGENGDSI SCFLGLSEEE QGGGAEFSNT ATKVDVNAER 300 EREGSVLSSN SDEGCNPDWW ADLCSSEVGL GIDEEWIDWD FQYGLTCQSD FWNLPAGVDG 360 ETVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 9e-24 | 12 | 116 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 154 | QKKKRKKK |
2 | 148 | 154 | KKKRKKK |
3 | 149 | 153 | KKRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Flavonol-specific transcription activator involved in the regulation of several genes of flavonoid biosynthesis. Activates the expression of CHS, CHI, F3H and FLS1. Controls flavonol biosynthesis primarily in cotyledons and leaves (PubMed:17419845, PubMed:20731781). Confers tolerance to UV-B (PubMed:19895401). {ECO:0000269|PubMed:17419845, ECO:0000269|PubMed:19895401, ECO:0000269|PubMed:20731781}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00598 | PBM | Transfer from AT5G49330 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010558436.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Triggered by HY5 in response to light and UV-B. {ECO:0000269|PubMed:19895401}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010558436.1 | 0.0 | PREDICTED: transcription factor MYB12 | ||||
Swissprot | Q9FJ07 | 1e-135 | MY111_ARATH; Transcription factor MYB111 | ||||
TrEMBL | D7MNR3 | 1e-129 | D7MNR3_ARALL; AtMYB111 | ||||
STRING | XP_010558436.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 1e-128 | myb domain protein 111 |