PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010534769.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 352aa    MW: 39524 Da    PI: 6.1563
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010534769.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.81.6e-151663148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++ Ed++l+  ++++G ++W++ ++  g+ R++k+c++rw +yl
   XP_010534769.1 16 RGPWSPCEDLRLIAFIQKHGHHNWRALPKQAGLLRCGKSCRLRWINYL 63
                     89******************************99************97 PP
2Myb_DNA-binding49.31.1e-1569114148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE++ +v++++ lG++ W++Ia++++ gRt++++k+ w+++l
   XP_010534769.1  69 RGNFTGEEEDTIVKLHRALGNK-WSKIASYLP-GRTDNEIKNMWNTHL 114
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.6E-23766IPR009057Homeodomain-like
PROSITE profilePS5129414.2321163IPR017930Myb domain
SuperFamilySSF466894.4E-2914110IPR009057Homeodomain-like
SMARTSM007173.3E-111565IPR001005SANT/Myb domain
PfamPF002493.8E-141663IPR001005SANT/Myb domain
CDDcd001679.82E-91863No hitNo description
PROSITE profilePS5129425.07164118IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.6E-2667118IPR009057Homeodomain-like
SMARTSM007174.8E-1668116IPR001005SANT/Myb domain
PfamPF002493.5E-1469114IPR001005SANT/Myb domain
CDDcd001676.98E-1171114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009866Biological Processinduced systemic resistance, ethylene mediated signaling pathway
GO:0071281Biological Processcellular response to iron ion
GO:0071732Biological Processcellular response to nitric oxide
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MGKGRAPCCD KSKVKRGPWS PCEDLRLIAF IQKHGHHNWR ALPKQAGLLR CGKSCRLRWI  60
NYLRPDVKRG NFTGEEEDTI VKLHRALGNK WSKIASYLPG RTDNEIKNMW NTHLKKKLAP  120
SESPKDSSSS SSSCGGHSAK LDEAEHYDGV KESIHCQEGN SSSAAKPHDD KLLNLIGDEP  180
IKGLPTSSIS CDVENNHQTC EFEAYKPLSP DHHQIDIWRE TGATFLETNG AIQGVHKQHL  240
LELPLCQMDM SCQFGRTCCE IQDAINKSGS LQVPLEFDAE FWDRLEGLGS FASSNGDTNI  300
HKCPNGSDFG SGHEYNNEWF EYLEDQNYYD YFLMGAEEVD PAADTFYTSH SV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C4e-27161184105C-Myb DNA-Binding Domain
1msf_C4e-27161184105C-Myb DNA-Binding Domain
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010534769.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010534769.10.0PREDICTED: myb-related protein Myb4
STRINGXP_010534769.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G56160.17e-75myb domain protein 72