PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010532312.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB

Protein Properties

Length: 289aa MW: 32717.5 Da PI: 7.9979

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010532312.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.7	5.4e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +v+++G+g+W+ +++ g+ R+ k+c++rw +yl XP_010532312.1 14 KGPWTPEEDIILVSYVQEHGPGNWRMVPENTGLLRCSKSCRLRWTNYL 61 79****************************99**********97 PP
2	Myb_DNA-binding	48.6	1.9e-15	67	112	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+++++++ ++lG++ W++Ia++++ Rt++++k++w+++l XP_010532312.1 67 RGNFTENEEKIIIHLQALLGNR-WAAIASYLP-QRTDNDVKNFWNTHL 112 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	25.552	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	1.87E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-16	14	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	6.8E-24	15	68	IPR009057	Homeodomain-like
CDD	cd00167	4.70E-11	16	61	No hit	No description
PROSITE profile	PS51294	19.469	66	116	IPR017930	Myb domain
SMART	SM00717	2.4E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	1.8E-14	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.14E-9	69	112	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.5E-24	69	116	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 289 aa Download sequence Send to blast
MGRPPCSENT DVKKGPWTPE EDIILVSYVQ EHGPGNWRMV PENTGLLRCS KSCRLRWTNY 60 LRPGIKRGNF TENEEKIIIH LQALLGNRWA AIASYLPQRT DNDVKNFWNT HLKKKLQKLQ 120 SDTEEPCNRP KRRFPDKGQW ERKLQTDINM AKKALREALS LDNKQTSTHQ PSSSTPTTYA 180 SSEENISRLL QGWTRKSSGL HLQANSSSNN QNALSSSVEG GALDQSLFTL NSANSESGSV 240 DGKAHLTPER SAFREESNET ETQGSLSLIE KWLLDDLISM PLDHNQELF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-26	9	116	22	128	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010532312.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010532312.1	0.0	PREDICTED: myb-related protein 306
Swissprot	P81392	1e-105	MYB06_ANTMA; Myb-related protein 306
TrEMBL	A0A2N9J4F3	1e-113	A0A2N9J4F3_FAGSY; Uncharacterized protein
STRING	XP_010532312.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74650.1	1e-107	myb domain protein 31

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]