PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523974.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 475aa    MW: 52406.8 Da    PI: 4.9704
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523974.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.5e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEd ll  ++  +G g+W++ +++ g++R++k+c++rw +yl
   XP_010523974.1 14 KGRWTAEEDHLLSSYILSHGEGSWRSLPKHAGLKRCGKSCRLRWINYL 61
                     79********************************************97 PP
2Myb_DNA-binding506.7e-1667118148
                      TSSS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T++E+e++v+++  lG+      +W++Ia +++ gRt++++k++w+++l
   XP_010523974.1  67 RGNITPQEEEIIVKLHSSLGNSklfgcRWSLIATHLP-GRTDNEIKNYWNSHL 118
                      7999****************99***************.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.046961IPR017930Myb domain
SuperFamilySSF466894.97E-2511114IPR009057Homeodomain-like
SMARTSM007177.7E-111363IPR001005SANT/Myb domain
PfamPF002491.5E-141461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-221568IPR009057Homeodomain-like
CDDcd001676.28E-81661No hitNo description
PROSITE profilePS5129422.27762122IPR017930Myb domain
SMARTSM007171.9E-1266120IPR001005SANT/Myb domain
PfamPF002499.2E-1467118IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2369122IPR009057Homeodomain-like
CDDcd001675.35E-1071118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MGRAPCCEKV GMKKGRWTAE EDHLLSSYIL SHGEGSWRSL PKHAGLKRCG KSCRLRWINY  60
LRSDIKRGNI TPQEEEIIVK LHSSLGNSKL FGCRWSLIAT HLPGRTDNEI KNYWNSHLSR  120
KLHSFIRKTT VSQEVAAVVM NAIKNVNPSP SPKRRGRTRR SSMKVKTSNP KNSTRKTKQN  180
VTGTHKTKPP AADVERQENA ESGGAISRVC EERSGKKEAA KEDALMVLSS CSGGADTSIG  240
FIADLGPCGY VDNIDYDLSI NGDIEDLSFD DTFDGYLHLD ESGHVFSWYG EEEPNNPGDS  300
EPVRGSGDIK HSVSDQDSAG LENIGGGSCS REILQSCPSV ESFLSYDEVN DGSDELMHSI  360
SEQTFVGNGN LNSSGCRGVS VSGSSSWTGD ATQSCSAVEF LNQDLANEIT DEFIDWDSVL  420
HEGQNLWEEK ESPDSLLSWL LEDERTTAFG QSTSDYDSGE WDREKENAMV TWLLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-211212225128MYB TRANSFORMING PROTEIN
1mse_C3e-21141224105C-Myb DNA-Binding Domain
1msf_C3e-21141224105C-Myb DNA-Binding Domain
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151157PKRRGRT
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523974.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523974.10.0PREDICTED: transcription factor MYB12-like isoform X1
STRINGXP_010523974.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.11e-107myb domain protein 12