PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG037377t1
Common NameTCM_037377
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 425aa    MW: 47558.7 Da    PI: 6.6006
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG037377t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.23.4e-17130177148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+WT  Ed++l d+vk +G g W+ I+++ g++R++k+c++rw +yl
  Thecc1EG037377t1 130 RGAWTLTEDKILTDYVKVHGEGKWRNIPKEAGLKRCGKSCRLRWMNYL 177
                       89********************************************97 PP
2Myb_DNA-binding52.21.4e-16183228148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ +++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++l
  Thecc1EG037377t1 183 RGNISPDEEDLIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 228
                       7899******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-23121180IPR009057Homeodomain-like
PROSITE profilePS5129417.349125177IPR017930Myb domain
SuperFamilySSF466892.14E-29128224IPR009057Homeodomain-like
SMARTSM007171.5E-13129179IPR001005SANT/Myb domain
PfamPF002495.3E-15130177IPR001005SANT/Myb domain
CDDcd001671.03E-10132177No hitNo description
PROSITE profilePS5129424.802178232IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.9E-25181231IPR009057Homeodomain-like
SMARTSM007172.4E-16182230IPR001005SANT/Myb domain
PfamPF002494.8E-15183228IPR001005SANT/Myb domain
CDDcd001672.73E-12187228No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 425 aa     Download sequence    Send to blast
MIMQFFSLQS FNCKIINCSF GDLSFNGEES TSGAPREGAP DRCYFPGEGS TDQCSLLLGA  60
PLPPSLGSTR SVLLRVLPFL REHQIGALVR TTCTFNWNFQ LSQSLAQGGE TESRAVMGRR  120
PCCSKEGMNR GAWTLTEDKI LTDYVKVHGE GKWRNIPKEA GLKRCGKSCR LRWMNYLRPD  180
IKRGNISPDE EDLIIRLHKL LGNRWSLIAG RLPGRTDNEI KNYWNTHLSK RGQGKERGPK  240
SNHSKVGKKP ITVKVDEDLV SSRVIRTKAL RFKEVFITPD AQQHRIENHH RNVAIPPSMD  300
PNLVQNVPAG SESSDRSLIT LSSNEEYPVD FMVDISAGEI SVPEIFASDF TSFSHDLGAS  360
EMDKVMRGDD ADNYMSKIAP SQAFLLPEEM EQNWSGSDYY IQANLDSDFG SLTAFLESAE  420
EWLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-2412823125127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982182.10.0PREDICTED: myb-related protein Myb4
TrEMBLA0A061GKT70.0A0A061GKT7_THECC; Myb domain protein 4, putative
STRINGEOY300280.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.13e-62myb domain protein 15
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]