PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG013983t2
Common NameTCM_013983
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 313aa    MW: 34960.8 Da    PI: 7.6303
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG013983t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.54.9e-164893148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg++T++E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Thecc1EG013983t2 48 RGNFTEQEEKMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTHL 93
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.379142IPR017877Myb-like domain
SuperFamilySSF466891.75E-2129102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-102953IPR009057Homeodomain-like
PROSITE profilePS5129424.7754397IPR017930Myb domain
SMARTSM007176.5E-164795IPR001005SANT/Myb domain
PfamPF002493.1E-154893IPR001005SANT/Myb domain
CDDcd001672.47E-115092No hitNo description
Gene3DG3DSA:1.10.10.602.3E-215498IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0010468Biological Processregulation of gene expression
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
CNKYSGIFFF LYINSSWFLP LLSFRGLLRC SKSCRLRWTN YLRPGIKRGN FTEQEEKMII  60
HLQALLGNRW AAIASYLPQR TDNDIKNYWN THLKKKLKKL QTGVDGQNQD GFSSSQSVSK  120
GQWERRLQTD IRMAKQALSE ALSLDKTNSS TDSKDFNLSH PYLKPSQSQA STYASSAENI  180
SRLLENWMKN PPKPAAHQTN SAETMTQNSF NNTTTAGSSS SEGAFSATTP EGFDSFFSFN  240
SSNSNASHES VSVDQNANLT PENSVFQGES KPNLETHQVP LTLIEKWLLD DGSAQAHEDL  300
INMSLEDSAG LF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-19129725108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00579DAPTransfer from AT5G62470Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037339.10.0PREDICTED: myb-related protein 306
SwissprotP813921e-95MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A061FX510.0A0A061FX51_THECC; Myb domain protein 30, putative isoform 2 (Fragment)
STRINGEOY218400.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G47600.12e-63myb domain protein 94
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]