PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG013400t2
Common NameTCM_013400
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 467aa    MW: 51702.6 Da    PI: 6.5157
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG013400t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.81.2e-085984127
                      TSSS-HHHHHHHHHHHHHTTTT-HHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktI 27
                      r +WT+eE++++++a +++G g W+ I
  Thecc1EG013400t2 59 REKWTEEEHQKFLEALRLYGRG-WRQI 84
                      789*******************.*998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466897.18E-74885IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.8E-55986IPR009057Homeodomain-like
PfamPF002491.9E-65984IPR001005SANT/Myb domain
CDDcd001672.26E-46184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 467 aa     Download sequence    Send to blast
MATQDQVEGT TSPNALKSGI CCSNSSPQCE TLTQFQELYT FKHDHTPKVR KPYTITKQRE  60
KWTEEEHQKF LEALRLYGRG WRQIEGFQVV RESNGGFEGS INPIEIPPPR PKRKPVHPYP  120
RKSVDSLKGI SPSSEPERSP SPSQFVREQD NKSPTSVLSA LTSDAMGSAA SEQQNGCSSP  180
TSCTTNMQSI NTSPVEKDID YATSNSSAEE EKASLSSVKV FGHSAVEDVL PMKLNADFKG  240
SVGAKGDAKM VVPFTSIKLF GKTVQVKDSR KPSMDAENFK SPTSKTAQGD IDAEGDMLVQ  300
ALPSTHLDTR LSLGTVNEDW SVVPSQANLS PYMEIHPDKL DHVESTSDAP LPWWTFYQGL  360
PFYYITSFNQ TQTDSCVEER VKQKEILNER SSTGSNTGSV SQAENREKSS YSVDSQCQRP  420
CPEGKTTLQK CSRGFVPYKR CLAERDMSSS VVMSEERERQ RSRVCS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037069.10.0PREDICTED: protein REVEILLE 7
TrEMBLA0A061FWD00.0A0A061FWD0_THECC; Homeodomain-like superfamily protein, putative isoform 2
STRINGEOY215700.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.18e-26MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]