PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG013400t1
Common NameTCM_013400
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 485aa    MW: 53751.9 Da    PI: 7.2262
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG013400t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-1659103147
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       r +WT+eE++++++a +++G g W+ I +++g ++t+ q++s+ qk+
  Thecc1EG013400t1  59 REKWTEEEHQKFLEALRLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 103
                       789*******************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.84E-1653107IPR009057Homeodomain-like
PROSITE profilePS5129421.654108IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-956106IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-1657106IPR006447Myb domain, plants
SMARTSM007174.5E-1358106IPR001005SANT/Myb domain
PfamPF002491.1E-1459102IPR001005SANT/Myb domain
CDDcd001674.02E-1161104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MATQDQVEGT TSPNALKSGI CCSNSSPQCE TLTQFQELYT FKHDHTPKVR KPYTITKQRE  60
KWTEEEHQKF LEALRLYGRG WRQIEEHVGT KTAVQIRSHA QKFFSKVVRE SNGGFEGSIN  120
PIEIPPPRPK RKPVHPYPRK SVDSLKGISP SSEPERSPSP SQFVREQDNK SPTSVLSALT  180
SDAMGSAASE QQNGCSSPTS CTTNMQSINT SPVEKDIDYA TSNSSAEEEK ASLSSVKVFG  240
HSAVEDVLPM KLNADFKGSV GAKGDAKMVV PFTSIKLFGK TVQVKDSRKP SMDAENFKSP  300
TSKTAQGDID AEGDMLVQAL PSTHLDTRLS LGTVNEDWSV VPSQANLSPY MEIHPDKLDH  360
VESTSDAPLP WWTFYQGLPF YYITSFNQTQ TDSCVEERVK QKEILNERSS TGSNTGSVSQ  420
AENREKSSYS VDSQCQRPCP EGKTTLQKCS RGFVPYKRCL AERDMSSSVV MSEERERQRS  480
RVCS*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007037069.10.0PREDICTED: protein REVEILLE 7
TrEMBLA0A061FVK60.0A0A061FVK6_THECC; Homeodomain-like superfamily protein, putative isoform 1
STRINGEOY215700.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91742738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.13e-44MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]