PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG007865t1

Common Name

TCM_007865

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 294aa MW: 33833.9 Da PI: 7.7943

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG007865t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.9	1.5e-15	42	89	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT+eEd +l +v+++G +W+ +++ g+ R++k+c++rw +yl Thecc1EG007865t1 42 KGTWTPEEDRKLSAYVTRYGCWNWRQLPKYAGLARCGKSCRLRWMNYL 89 799***************99**********************97 PP
2	Myb_DNA-binding	50.8	3.7e-16	95	139	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ ++eE+e ++++++ G++ W++Ia+ ++ gRt++++k++w++ Thecc1EG007865t1 95 RGNYSKEEEETIIRLHESQGNR-WSAIAAQLP-GRTDNEIKNHWHTT 139 899*****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	16.316	37	89	IPR017930	Myb domain
SuperFamily	SSF46689	2.64E-28	39	136	IPR009057	Homeodomain-like
SMART	SM00717	4.2E-9	41	91	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-13	42	89	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-22	43	96	IPR009057	Homeodomain-like
CDD	cd00167	1.08E-8	44	89	No hit	No description
PROSITE profile	PS51294	23.298	90	144	IPR017930	Myb domain
SMART	SM00717	5.4E-16	94	142	IPR001005	SANT/Myb domain
Pfam	PF00249	9.8E-15	95	139	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-25	97	144	IPR009057	Homeodomain-like
CDD	cd00167	4.78E-11	97	140	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 294 aa Download sequence Send to blast
MDGTREAETE REENRVSDRV SERRREGNMV RTPCCDKSGL RKGTWTPEED RKLSAYVTRY 60 GCWNWRQLPK YAGLARCGKS CRLRWMNYLR PNIKRGNYSK EEEETIIRLH ESQGNRWSAI 120 AAQLPGRTDN EIKNHWHTTL KKRFKHKPSV PKNEKDNPRD PIKRGTSKET EFETKLDNHL 180 LINSTSPPLI LESSLSSPQP ASSDQNSSIT TDNTVVSSKD SVHINNKALL EAYEANSGNF 240 WTEPFFSDSC FMSSDMLLPM MDPARYEAHE FPFLDGEILC PFGFYDQLQG LNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-27	40	144	5	108	B-MYB
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF313482	0.0	KF313482.1 Firmiana danxiaensis microsatellite a1598_SSR22 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007043431.2	0.0	PREDICTED: myb-related protein Myb4
TrEMBL	A0A061E3S1	0.0	A0A061E3S1_THECC; Myb domain protein 15, putative
STRING	EOX99262	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4	28	2646

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23250.1	3e-59	myb domain protein 15

Link Out ? help Back to Top
Phytozome	Thecc1EG007865t1
Entrez Gene	18608584

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]