PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG005112t1
Common NameTCM_005112
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 288aa    MW: 32121 Da    PI: 8.7831
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG005112t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.17.3e-171461148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                      rg+WT+ Ed llv++++ +G g+W++ +++ g+ R++k+c++rw +yl
  Thecc1EG005112t1 14 RGPWTPREDTLLVKYIQAHGDGHWRSLPKKAGLLRCGKSCRLRWMNYL 61
                      89******************************99************97 PP
2Myb_DNA-binding53.55.4e-1767112148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
   Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                       rg+ T++Ed+l+++++ +lG++ W++Ia +++ gRt++++k++w+++l
  Thecc1EG005112t1  67 RGNITPDEDDLIIRLHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112
                       7999******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.301961IPR017930Myb domain
SuperFamilySSF466892.71E-3011108IPR009057Homeodomain-like
SMARTSM007171.1E-121363IPR001005SANT/Myb domain
PfamPF002495.7E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.5E-241568IPR009057Homeodomain-like
CDDcd001671.65E-101661No hitNo description
PROSITE profilePS5129426.81762116IPR017930Myb domain
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002491.8E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-2669116IPR009057Homeodomain-like
CDDcd001671.33E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MGRAPCCSKV GLHRGPWTPR EDTLLVKYIQ AHGDGHWRSL PKKAGLLRCG KSCRLRWMNY  60
LRPDIKRGNI TPDEDDLIIR LHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKRLLSQG  120
TDPNTHKKLS EPAVQQVKKR KSSRGNSNKK QNNSKGKGAK VEPEKPKVHL PKPVRVTSFS  180
LPRNDSFDQC NTFSTVSSSQ GGEGGLGTEV VQGPWSDNVN DDENGTGFLA AYDDHGFVNG  240
SDFECQSHVP ASDDDNSLEK LYEEYLQLLK TNDDQVQLDS FAESLLI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU3243460.0GU324346.1 Theobroma cacao cultivar Scavina 6 TT2 like MYB transcriptoin factor (MYBPA) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007051504.10.0PREDICTED: myb-related protein 308
SwissprotP813939e-72MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A061DUF40.0A0A061DUF4_THECC; Myb domain protein 7, putative
STRINGEOX956610.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.12e-71myb domain protein 3
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]