PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5BL_5DE02D63E.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HD-ZIP
Protein Properties Length: 269aa    MW: 28884.9 Da    PI: 4.4309
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5BL_5DE02D63E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.23.3e-1952105356
                            --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
               Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                            k++++++eq+++Le+ Fe ++++  e++++LA+ lgL+ rqV vWFqNrRa++k
  Traes_5BL_5DE02D63E.1  52 KKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 105
                            45689************************************************9 PP
2HD-ZIP_I/II133.86.1e-4351143193
            HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                            ekkrrls+eqv++LE+sFe e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal+ ++++L++++e+L 
  Traes_5BL_5DE02D63E.1  51 EKKRRLSAEQVRALERSFEVENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYNALRHSYDALRVDHDALRRDKEALL 138
                            69************************************************************************************** PP

            HD-ZIP_I/II  89 eelke 93 
                            +e+k+
  Traes_5BL_5DE02D63E.1 139 AEIKD 143
                            99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.68E-2040109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-2049112IPR009057Homeodomain-like
SMARTSM003891.5E-1850111IPR001356Homeobox domain
PROSITE profilePS5007117.15151107IPR001356Homeobox domain
PfamPF000461.5E-1652105IPR001356Homeobox domain
CDDcd000867.02E-1852108No hitNo description
PRINTSPR000319.1E-67887IPR000047Helix-turn-helix motif
PROSITE patternPS00027082105IPR017970Homeobox, conserved site
PRINTSPR000319.1E-687103IPR000047Helix-turn-helix motif
PfamPF021833.2E-17107148IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0030308Biological Processnegative regulation of cell growth
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MKRPGGGNPS SLHQMASPND MDYGVVGMEA DGDAEEEMMA CGGGGGCGGG EKKRRLSAEQ  60
VRALERSFEV ENKLEPERKA RLARDLGLQP RQVAVWFQNR RARWKTKQLE RDYNALRHSY  120
DALRVDHDAL RRDKEALLAE IKDLKGKLGD EEAAASFTSV KEEPAASDGP PPAGMGSSDS  180
DSSGVLNDTD ATGATPTEEA PAPEMGTLLG GPGAAGAAAA GHGQMFLHGN FLKVEEDETG  240
FLDDEEPCGG FFADEPPLAW WTEPTDPWK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17682ERKARLA
299107RRARWKTKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
UniProtProbable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00051PBMTransfer from AT4G40060Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
UniProtINDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3540630.0AK354063.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1004L21.
GenBankAK3558870.0AK355887.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1027I19.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020148015.10.0homeobox-leucine zipper protein HOX4-like
SwissprotQ6K4981e-120HOX4_ORYSJ; Homeobox-leucine zipper protein HOX4
SwissprotQ9XH371e-120HOX4_ORYSI; Homeobox-leucine zipper protein HOX4
TrEMBLA0A3B6LNM00.0A0A3B6LNM0_WHEAT; Uncharacterized protein
TrEMBLA0A446UCG00.0A0A446UCG0_TRITD; Uncharacterized protein
STRINGTraes_5BL_5DE02D63E.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30093482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65310.22e-43homeobox protein 5
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]