PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_2BL_3041037F1.1
Organism
Triticum aestivum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family MYB_related
Protein Properties Length: 415aa    MW: 45024.2 Da    PI: 7.5261
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_2BL_3041037F1.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.72.1e-163983147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                           r +WT+eE++l+++a +++G   W++I +++g ++t+ q++s+ qk+
  Traes_2BL_3041037F1.1 39 REKWTEEEHKLFLEAMQLHGRA-WRRIQEHIG-TKTAVQIRSHAQKF 83
                           789*****************88.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-153488IPR009057Homeodomain-like
PROSITE profilePS5129420.0233488IPR017930Myb domain
TIGRFAMsTIGR015576.8E-153786IPR006447Myb domain, plants
SMARTSM007174.9E-133886IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-103979IPR009057Homeodomain-like
PfamPF002491.7E-143982IPR001005SANT/Myb domain
CDDcd001672.79E-104184No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 415 aa     Download sequence    Send to blast
MARFQETKPD LLNSGSDTRM MAEARLPKAR KPYMITKQRE KWTEEEHKLF LEAMQLHGRA  60
WRRIQEHIGT KTAVQIRSHA QKFFSKVTRD SSGDSGGSSS GAGPPIQIPP PRPKRKSVHP  120
YPCNLRSAQP GKHAHAALLR VDKPQLSMCE QGNGSPTSVV TTSQIGLGSE SFDSDTSTID  180
IEERCPTPST GTAEVAVQAP PTNDAKKSKG SSTSEEVVCD NTSDAPVLKL FGKTVVVNES  240
HQLPSPGTCD LQTAADMELD TSAETPTSAP EANTWSPWLA NSQQFMYYVP QGAVFFGYNN  300
GSVPYPVPSS PKAGQQHQQQ ASEAAAELRR REASLNTASS SVAETTARNS AESCTGAVGG  360
DDEVVHAAGL RERVSPTLVQ QRGFMPYKRC AAETKAMQPQ APREEADREM TRLCL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00146DAPTransfer from AT1G18330Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3550060.0AK355006.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1014J06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020193476.10.0protein REVEILLE 7-like
TrEMBLA0A3B6CCV00.0A0A3B6CCV0_WHEAT; Uncharacterized protein
TrEMBLA0A446MPS90.0A0A446MPS9_TRITD; Uncharacterized protein
STRINGTraes_2BL_3041037F1.10.0(Triticum aestivum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27223686
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18330.18e-36MYB_related family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]