PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Traes_1DS_711044AD5.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
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Family | MYB | ||||||||
Protein Properties | Length: 314aa MW: 34791.9 Da PI: 6.79 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rgrWT+ Ed+ l+++++++G g+W++ ++ g+ R++k+c++rw +yl Traes_1DS_711044AD5.1 14 RGRWTAKEDDTLAKYIARHGEGSWRSLPQNAGLLRCGKSCRLRWVNYL 61 8*******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 57.1 | 4.3e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+++ eEd+l+v++++ lG++ W++Ia++++ gRt++++k++w+ + Traes_1DS_711044AD5.1 67 RGNFSNEEDDLIVKLHATLGNR-WSLIASHLP-GRTDNEIKNYWNAH 111 89********************.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 13.859 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 8.99E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.0E-11 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-20 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.38E-9 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 25.132 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 1.4E-17 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-16 | 67 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.6E-25 | 69 | 115 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.63E-13 | 69 | 112 | No hit | No description |
Pfam | PF06640 | 5.4E-4 | 130 | 169 | IPR010588 | Myb-related protein P, C-terminal |
Pfam | PF06640 | 2.1E-21 | 186 | 314 | IPR010588 | Myb-related protein P, C-terminal |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 314 aa Download sequence Send to blast |
MGRAPCCEKV GLKRGRWTAK EDDTLAKYIA RHGEGSWRSL PQNAGLLRCG KSCRLRWVNY 60 LRDGVRRGNF SNEEDDLIVK LHATLGNRWS LIASHLPGRT DNEIKNYWNA HLSRRSHSFR 120 HTHTAGKETT ITIDINKISA TSKRRGGRAP RSSMKKQPVP EPTKSTESSS PVPAISSSTS 180 SLPQGYSDKN QPINSIPNDM PCSDHVDLNG GVLKPNYAKD SMNQIGILEE ESEIEGLLSS 240 MDDMPASGLN GLQHGGHLPL VEDLLDMDWE GFATHLWDQP AQSDQLQPAE PQATMGSVSD 300 ELESFVHWLL SDTC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-22 | 12 | 115 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00627 | PBM | Transfer from PK06182.1 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | - | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020178489.1 | 0.0 | myb-related protein P-like | ||||
TrEMBL | A0A3B5ZMN5 | 0.0 | A0A3B5ZMN5_WHEAT; Uncharacterized protein | ||||
STRING | Traes_1DS_711044AD5.1 | 0.0 | (Triticum aestivum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-70 | myb domain protein 12 |
Publications ? help Back to Top | |||
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