PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sevir.2G412300.2.p
Organism
Setaria viridis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Cenchrinae; Setaria
Family MYB_related
Protein Properties Length: 273aa    MW: 28753.9 Da    PI: 8.0842
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sevir.2G412300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.62.1e-162166148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                        rg++T +E++l+v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Sevir.2G412300.2.p 21 RGNFTDQEEKLIVHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 66
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500904.449115IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.9E-10227IPR009057Homeodomain-like
SuperFamilySSF466891.04E-20271IPR009057Homeodomain-like
PROSITE profilePS5129424.9031670IPR017930Myb domain
SMARTSM007173.2E-162068IPR001005SANT/Myb domain
PfamPF002494.2E-152166IPR001005SANT/Myb domain
CDDcd001672.30E-122366No hitNo description
Gene3DG3DSA:1.10.10.604.6E-202867IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MRCSKSCRLR WTNYLRPGIK RGNFTDQEEK LIVHLQALLG NRWAAIASYL PERTDNDIKN  60
YWNTHLKRKL QSGGEGAAKP PAHRPASSSK GQWERRLQTD IDMARRALRE ALTPLGDLKT  120
QQHDGVDAAG AGTGGGDSPA SSSSGASQCS PSAAAPGPYV LTTENISRML DGWAGGRKVR  180
RGGSAGPGTP GGAESASTGS SDASEVSYGG AAVASAAPAT AGTLSEYETK PAVAAPQMPL  240
SAIESWLFDD DSHFHQVQNA SLLDVPTMDY PF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-1927240110B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00395DAPTransfer from AT3G47600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSevir.2G412300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9554750.0EU955475.1 Zea mays clone 1533591 MYB94 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958408.10.0transcription factor MYB30
TrEMBLK3ZVC90.0K3ZVC9_SETIT; Uncharacterized protein
STRINGSi030560m0.0(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62470.14e-55myb domain protein 96