PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PGSC0003DMP400019655
Common NameLOC102592871
Organism
Solanum tuberosum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum
Family bHLH
Protein Properties Length: 445aa    MW: 46271.2 Da    PI: 6.5664
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PGSC0003DMP400019655genomePGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12268313555
                           HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           h+++Er RR+ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  PGSC0003DMP400019655 268 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 313
                           99***********************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-17261323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.09E-13261317No hitNo description
PROSITE profilePS5088817.39263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.9E-16265322IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-9268313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-13269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MQAMNSLLSQ QQQSQMSLQD LQNGGNGGST GGVGGLGQHN MGNFHFDPTS SHDDFLEQIL  60
SSVPSSSPWP DLSKSWDPHH HLSSPPHNPS SGEDQPPSNP LHSQFHYDDQ ASSLLASKLR  120
QHQITGGGAA AAAKALMLQQ QLLLSRTLAG NGLRSPNGAS GDNGLLSLPL NLSNNGDQND  180
GVANPANDNS VQALFNGFTG SLGQTSNQPQ HFHHPQGGSM QSQSFGAPAM NQTPAASGSV  240
GGGGGSTPAA QPKQQRVRAR RGQATDPHSI AERLRRERIA ERMKALQELV PNANKTDKAS  300
MLDEIIDYVK FLQLQVKVLS MSRLGGAAAV APLVADMSSE GRGEGNVGRG GNGTAASSSN  360
SETMTVTEHQ VAKLMEEDMG SAMQYLQGKG LCLMPISLAT AISTSTRIPL LSPEATSPTL  420
SALTVQSATI GNAAGKDATS LSEP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272277RLRRER
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00659PBMTransfer from Pp3c14_15890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPGSC0003DMP400019655
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9755190.0HG975519.1 Solanum lycopersicum chromosome ch07, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006343666.10.0PREDICTED: transcription factor bHLH66
SwissprotQ9ZUG95e-80BH066_ARATH; Transcription factor bHLH66
TrEMBLM1ARW20.0M1ARW2_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000289170.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37592445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-58LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Xu X, et al.
    Genome sequence and analysis of the tuber crop potato.
    Nature, 2011. 475(7355): p. 189-95
    [PMID:21743474]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]