PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0453s0090.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

TCP

Protein Properties

Length: 320aa MW: 34654.7 Da PI: 10.0992

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0453s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119	5.9e-37	77	167	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsss 87 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG ++d++ti+WLlqqa+p+i+++tgt++++as+ a++s+s+++ns s SapurV1A.0453s0090.1.p 77 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGNKSDGETIQWLLQQAEPSIIAATGTGTIPASALaVAGASVSEQGNSVS 163 789******************************************************************888644444444443333 PP TCP 88 g..k 89 + + SapurV1A.0453s0090.1.p 164 AglH 167 3442 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.8E-30	82	179	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	26.351	83	137	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MPFRGHLLQS KRLLFSSVPM EPKGPNHHQP QVPSFLNPPQ KASVPESNIN NHNRHPAEIK 60 DFQIMIANRD DNKKQLAPKR SSNKDRHKKV DGRGRRIRMP ALCAARIFQL TRELGNKSDG 120 ETIQWLLQQA EPSIIAATGT GTIPASALAV AGASVSEQGN SVSAGLHAKT EGLGPADTGS 180 RDRTNWTMMN TNLGRSNLAS GVWPSAGGIG SGFVPNSGQS ASNFGNENSN TLPKYGGFQG 240 VEFPNINMGL MSFYSMFSGT NQQFPGLELG LSQDGMFNPQ ASSPFYQQMV QGRGVLNSLN 300 EEQQQEQPPD KDDSQKSRQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269\|PubMed:12631321, ECO:0000269\|PubMed:16123132}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00641	PBM	Transfer from Manes.12G007700	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0453s0090.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024452361.1	0.0	transcription factor TCP20
Swissprot	Q9LSD5	4e-69	TCP20_ARATH; Transcription factor TCP20
TrEMBL	A0A2K2BT32	0.0	A0A2K2BT32_POPTR; Uncharacterized protein
STRING	POPTR_0003s16630.1	1e-166	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3339	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27010.1	2e-70	TCP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0453s0090.1.p

Publications ? help Back to Top
Zhu P, et al. Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] Wu JF, et al. LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] Guan P, et al. Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] Guan P Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] Zhang N, et al. MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]