PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Manes.12G007700.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Manihoteae; Manihot
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Family | TCP | ||||||||
Protein Properties | Length: 300aa MW: 32367.1 Da PI: 10.0423 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 122.4 | 5.2e-38 | 56 | 141 | 2 | 86 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnss 86 a+k+++++++h kv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tg+++++as+ a++s+s++++s Manes.12G007700.1.p 56 APKRSSNKDRHKKVDGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGSGTIPASALaAAGASVSQQGTSV 141 789******************************************************************99965555555554332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 3.7E-31 | 61 | 193 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.458 | 62 | 116 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 300 aa Download sequence Send to blast |
MESKGSNHHQ KLLPTFLNPP PNPTMAENNI NNKNPAEIKD FQIMIANKDD NKKQLAPKRS 60 SNKDRHKKVD GRGRRIRMPA LCAARIFQLT RELGHKSDGE TIQWLLQQAE PSIIAATGSG 120 TIPASALAAA GASVSQQGTS VSTGLHTKIE GLGPSIGSRE RANWTMMTSN LGRPNIAGGM 180 WPSAGGIGAG FLSNTSQAAT NFGNENPNNL PKFGFHGVEF PNINMGFMSL YSMFSGANQQ 240 IPGLELGLSQ DGHTGLLNPQ ALSQFYQQMG QNRSSLNSFN QQQQQEQNPD EDDSQGSRR* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00641 | PBM | 25215497 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Manes.12G007700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021629375.1 | 0.0 | transcription factor TCP20-like | ||||
Swissprot | Q9LSD5 | 8e-71 | TCP20_ARATH; Transcription factor TCP20 | ||||
TrEMBL | A0A2C9UUD8 | 0.0 | A0A2C9UUD8_MANES; Uncharacterized protein | ||||
STRING | cassava4.1_034237m | 0.0 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3339 | 32 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27010.1 | 2e-70 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Manes.12G007700.1.p |