PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0043100
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C2H2
Protein Properties Length: 393aa    MW: 44227.6 Da    PI: 7.0244
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0043100genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.3e-05114138123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y C+   Cgk F ++s LkrH   H
  Spipo9G0043100 114 YICHydGCGKKFLDSSKLKRHFLIH 138
                     89*******************8877 PP
2zf-C2H220.31.5e-06144168123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     y C+   Cgk Fs   nL+ H+rtH
  Spipo9G0043100 144 YMCTyeGCGKAFSLDFNLRAHMRTH 168
                     899999******************9 PP
3zf-C2H217.71e-05174198123
                     EEET..TTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                     ++Cp  dC k+F +++ L+ Hi++H
  Spipo9G0043100 174 HVCPyeDCQKRFAHSYKLQGHIKSH 198
                     79**********************6 PP
4zf-C2H2187.7e-06255280123
                     EEET..TTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                     y Cp   Cgks+ + + Lk H+r+ H
  Spipo9G0043100 255 YACPyeGCGKSYIHEYKLKLHLRReH 280
                     89**********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.4E-1480111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.88785114IPR007087Zinc finger, C2H2
SMARTSM003550.006485109IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087109IPR007087Zinc finger, C2H2
SuperFamilySSF576674.95E-887138No hitNo description
Gene3DG3DSA:3.30.160.601.3E-13112134IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.942114143IPR007087Zinc finger, C2H2
SMARTSM003550.0024114138IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116138IPR007087Zinc finger, C2H2
SuperFamilySSF576676.68E-16125178No hitNo description
Gene3DG3DSA:3.30.160.607.2E-21135167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015713.235144173IPR007087Zinc finger, C2H2
SMARTSM003557.1E-4144168IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280146168IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-11168200IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.77E-5168201No hitNo description
PROSITE profilePS5015710.616174203IPR007087Zinc finger, C2H2
SMARTSM003550.0073174198IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280176199IPR007087Zinc finger, C2H2
SuperFamilySSF576677.01E-6251278No hitNo description
Gene3DG3DSA:3.30.160.602.5E-9253278IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0014255280IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.699255285IPR007087Zinc finger, C2H2
PROSITE patternPS000280257280IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MEMQAISSFM PENYPMGAYE GRMRREVVPA ARWLKTWVPQ DLLATGGKGM VLKWVREDVL  60
QAMNEKLEEP EHEEREPEPT TEILFLCSFE GCGKTFIDVA ALRKHSHVHG EKQYICHYDG  120
CGKKFLDSSK LKRHFLIHTG EKAYMCTYEG CGKAFSLDFN LRAHMRTHSQ ENYHVCPYED  180
CQKRFAHSYK LQGHIKSHHE KVPPFCPFFS LRHRSDFWAA PPQAAGTSMA KSAPPEERAA  240
AAPKPAAALF SDRPYACPYE GCGKSYIHEY KLKLHLRREH PGHGQDNGKL DAEGKSSAGK  300
ASKRSRSSSL SAKLQQQQQQ ATPPPPPPSK ISRKAPALTP ASSSKKPWPP ATAKGAYEDS  360
EETEEDCENP EEDAWRYQGT TNADDEETED ED*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C5e-37871988119PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026388132.11e-133zinc finger transcription factor YY1-like isoform X2
SwissprotQ2V3L31e-114YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A1D1Z8531e-153A0A1D1Z853_9ARAE; Putative zinc finger protein At4g06634
STRINGXP_008807673.11e-122(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20943899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.11e-102C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]