PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0013200
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family NF-YA
Protein Properties Length: 326aa    MW: 35161.1 Da    PI: 7.4032
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0013200genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.73.9e-33165221158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e e+kl +k rkpylheSRh+hA+rR+Rg+gGrF
  Spipo9G0013200 165 EEPVYVNAKQYHGILRRRQSRAKAELENKL-IKVRKPYLHESRHQHAMRRARGCGGRF 221
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.1E-38163224IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.748164224IPR001289Nuclear transcription factor Y subunit A
PfamPF020453.8E-28166221IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006161.8E-24167189IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860169189IPR018362CCAAT-binding factor, conserved site
PRINTSPR006161.8E-24198221IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010262Biological Processsomatic embryogenesis
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MRQESLSRST VEADEHAARS TAVCPQPWWR GAGYDASPGL GLDIASKSPP LDGLEVRERG  60
GGGQLQQESG VGEAEGQSKR NQDRAAQEGP DGNYGKEQHL QPVAAEFLVP HAQLELGHSI  120
ACAPYMYPET YYNGLMGAYG AQPLVNSQLL GMPHTRVLLP LEMAEEPVYV NAKQYHGILR  180
RRQSRAKAEL ENKLIKVRKP YLHESRHQHA MRRARGCGGR FLNTKKGDGS AAADPSSKTG  240
SGSDQSRSPP PASVSESLPA DYSGVQELKA HMVQGICDGS YQPHAGFHLS AFHSISDERA  300
DDGDCSGQQR SGMAVNQAPK RVLTI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-23165237274NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010910375.11e-105nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_010910376.11e-105nuclear transcription factor Y subunit A-7 isoform X1
RefseqXP_010910377.11e-105nuclear transcription factor Y subunit A-7 isoform X1
TrEMBLA0A1D1Y8491e-134A0A1D1Y849_9ARAE; Nuclear transcription factor Y subunit A-1
STRINGXP_008790783.19e-96(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82053649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.31e-48nuclear factor Y, subunit A1