PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo9G0013000
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family C3H
Protein Properties Length: 731aa    MW: 78484.6 Da    PI: 6.18
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo9G0013000genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.7e-08283303526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C++f++ G C++Gd C +aHg
  Spipo9G0013000 283 PCPDFRK-GACRRGDLCEYAHG 303
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002042.22E-148136No hitNo description
SMARTSM0024830001143IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.202.9E-1512139IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.01E-1416139IPR020683Ankyrin repeat-containing domain
PfamPF127963.7E-920128IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00266089IPR002110Ankyrin repeat
PROSITE profilePS5029716.54760136IPR020683Ankyrin repeat-containing domain
PROSITE profilePS500888.6836092IPR002110Ankyrin repeat
SMARTSM002480.1296128IPR002110Ankyrin repeat
PROSITE profilePS5008810.63396131IPR002110Ankyrin repeat
SMARTSM003561.2E-5278304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4282305IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.169283305IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-5283303IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4311341IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.643313337IPR000571Zinc finger, CCCH-type
SMARTSM0035691313336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 731 aa     Download sequence    Send to blast
MSLLLSMDSE EDSPSLLELA ANNDVEAFKL CIERSGSSSS VDEIGLWYGR KKGSNQMVLD  60
YRTPLMVAAT YGSVEILELI LSLVNDVDIN RCCGSDKTTA LHCAASGGSV NAVDAVKVLL  120
LAGADPESVD AAGRRPSDVI VVPPRLPHLR ASLEDLLGPS TSTAAAQSAG SGDDFSHLPS  180
SPDDSDSVSS PTAEKPHEIP PPPAAAAAAA AAAEKEKREY PVDPSLPDIK NSIYATDEFR  240
MFSFKVRPCS RAYSHDWTEC PFVHPGENAR RRDPRKYHYS CVPCPDFRKG ACRRGDLCEY  300
AHGVFECWLH PAQYRTRLCK DGTGCTRRVC FFAHTAEELR PLYVSTGSAV PSPRSSSSAA  360
AAAMDMAAAM SLLPGSPSSV SVMSPSPFTP PMSPSAGNGG IHSAMAWPQP SVPTLHLPGS  420
NLQSSRLRSS LSARDIPVDE FSVLPDFDTQ QLLNEFPSFS SAQQGRLGSS RAGVARTKSL  480
APSNLEDLFS MEMPPSPRYS SDQVPVFSPS HKAAVLNQFQ HQHQHQHQQQ QQQQQQQHQQ  540
QQTLLSPINT SSVFSPKTAE PGHNSFLQAS FGMMSPGRMS PRGVEPMSPI NSRLASFTHR  600
EQQQQQHLRS LSSRELGSPA NSAGELWSRW GSPGGKLDWG PNGDGLAAAT GGGGGRFKRS  660
SSFETLCCSG GEEPDVSWVQ SLVKEPSPEM KSKMIATPSA EAHSAGNGES QMDAMDHAVL  720
GAWMEQLQLD *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021831470.10.0zinc finger CCCH domain-containing protein 30
RefseqXP_021831471.10.0zinc finger CCCH domain-containing protein 30
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1D1Z2G10.0A0A1D1Z2G1_9ARAE; Zinc finger CCCH domain-containing protein 24
STRINGEMJ058250.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]