PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | AT2G41900.1 | ||||||||
Common Name | OXS2, T6D20.20, TZF7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
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Family | C3H | ||||||||
Protein Properties | Length: 716aa MW: 77992.1 Da PI: 6.3083 | ||||||||
Description | CCCH-type zinc finger protein with ARM repeat domain | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.3e-07 | 306 | 326 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg AT2G41900.1 306 PCPDFRK-GACRRGDMCEYAHG 326 8******.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF48403 | 6.68E-17 | 40 | 183 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.2E-17 | 43 | 184 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 1.99E-14 | 48 | 182 | No hit | No description |
Pfam | PF12796 | 2.7E-10 | 86 | 158 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 16.308 | 90 | 193 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0062 | 90 | 120 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 8.8E-5 | 91 | 106 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 12.476 | 125 | 160 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.0039 | 125 | 157 | IPR002110 | Ankyrin repeat |
PRINTS | PR01415 | 8.8E-5 | 144 | 158 | IPR002110 | Ankyrin repeat |
SMART | SM00356 | 4.0E-6 | 301 | 327 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 6.3E-5 | 306 | 326 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.582 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 6.1E-4 | 306 | 328 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 68 | 336 | 359 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 6.963 | 336 | 360 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000013 | anatomy | cauline leaf | ||||
PO:0000037 | anatomy | shoot apex | ||||
PO:0000230 | anatomy | inflorescence meristem | ||||
PO:0000293 | anatomy | guard cell | ||||
PO:0008019 | anatomy | leaf lamina base | ||||
PO:0009005 | anatomy | root | ||||
PO:0009006 | anatomy | shoot system | ||||
PO:0009009 | anatomy | plant embryo | ||||
PO:0009010 | anatomy | seed | ||||
PO:0009025 | anatomy | vascular leaf | ||||
PO:0009029 | anatomy | stamen | ||||
PO:0009030 | anatomy | carpel | ||||
PO:0009031 | anatomy | sepal | ||||
PO:0009032 | anatomy | petal | ||||
PO:0009046 | anatomy | flower | ||||
PO:0009047 | anatomy | stem | ||||
PO:0009052 | anatomy | flower pedicel | ||||
PO:0020030 | anatomy | cotyledon | ||||
PO:0020038 | anatomy | petiole | ||||
PO:0020100 | anatomy | hypocotyl | ||||
PO:0020137 | anatomy | leaf apex | ||||
PO:0025022 | anatomy | collective leaf structure | ||||
PO:0025281 | anatomy | pollen | ||||
PO:0001054 | developmental stage | vascular leaf senescent stage | ||||
PO:0001078 | developmental stage | plant embryo cotyledonary stage | ||||
PO:0001081 | developmental stage | mature plant embryo stage | ||||
PO:0001185 | developmental stage | plant embryo globular stage | ||||
PO:0004507 | developmental stage | plant embryo bilateral stage | ||||
PO:0007064 | developmental stage | LP.12 twelve leaves visible stage | ||||
PO:0007095 | developmental stage | LP.08 eight leaves visible stage | ||||
PO:0007098 | developmental stage | LP.02 two leaves visible stage | ||||
PO:0007103 | developmental stage | LP.10 ten leaves visible stage | ||||
PO:0007115 | developmental stage | LP.04 four leaves visible stage | ||||
PO:0007123 | developmental stage | LP.06 six leaves visible stage | ||||
PO:0007611 | developmental stage | petal differentiation and expansion stage | ||||
PO:0007616 | developmental stage | flowering stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 716 aa Download sequence Send to blast |
MCCGSDRLNQ IVSSRSSLPI SFEEDNNLVT NTDMNHLTVE TEDTFASLLE LAANNDVEGV 60 RLSIERDPSC VDEAGLWYGR QKGSKAMVND YRTPLMVAAT YGSIDVIKLI VSLTDADVNR 120 ACGNDQTTAL HCAASGGAVN AIQVVKLLLA AGADLNLLDA EGQRAGDVIV VPPKLEGVKL 180 MLQELLSADG SSTAERNLRV VTNVPNRSSS PCHSPTGENG GSGSGSPLGS PFKLKSTEFK 240 KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCAR RVCFFAHTPE 360 ELRPLYASTG SAVPSPRSNA DYAAALSLLP GSPSGVSVMS PLSPSAAGNG MSHSNMAWPQ 420 PNVPALHLPG SNLQSSRLRS SLNARDIPTD EFNMLADYEQ QQLLNEYSNA LSRSGRMKSM 480 PPSNLEDLFS AEGSSSPRFT DSALASAVFS PTHKSAVFNQ FQQQQQQQQS MLSPINTSFS 540 SPKSVDHSLF SGGGRMSPRN VVEPISPMSA RVSMLAQCVK QQQQQQQQQQ QQHQFRSLSS 600 RELRTNSSPI VGSPVNNNTW SSKWGSSNGQ PDWGMSSEAL GKLRSSSSFD GDEPDVSWVQ 660 SLVKETPAEA KEKAATSSSG EHVMKQPNPV EPVMDHAGLE AWIEQMQLDQ LVAQQN |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
At.23950 | 0.0 | floral meristem| flower| root| seed| vegetative tissue |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 145360895 | 0.0 | ||||
Genevisible | 267534_at | 0.0 | ||||
Expression Atlas | AT2G41900 | - | ||||
AtGenExpress | AT2G41900 | - | ||||
ATTED-II | AT2G41900 | - |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | AT2G41900.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Interaction ? help Back to Top | ||||||
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Source | Intact With | |||||
IntAct | Search P93755 |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
T-DNA Express | AT2G41900 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY037232 | 0.0 | AY037232.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds. | |||
GenBank | AY093957 | 0.0 | AY093957.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. | |||
GenBank | U90439 | 0.0 | U90439.3 Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_565962.1 | 0.0 | CCCH-type zinc finger protein with ARM repeat domain-containing protein | ||||
Swissprot | P93755 | 0.0 | C3H30_ARATH; Zinc finger CCCH domain-containing protein 30 | ||||
TrEMBL | A0A178VPY5 | 0.0 | A0A178VPY5_ARATH; OXS2 | ||||
STRING | AT2G41900.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1785 | 28 | 79 | Representative plant | OGRP709 | 15 | 69 |
Link Out ? help Back to Top | |
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Phytozome | AT2G41900.1 |
Entrez Gene | 818790 |
iHOP | AT2G41900 |
wikigenes | AT2G41900 |