PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo8G0071900
Organism
Spirodela polyrhiza
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family GATA
Protein Properties Length: 274aa    MW: 29233.5 Da    PI: 8.7273
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo8G0071900genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.71.5e-18145179135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nC t +TplWR+gp+g+k+LCnaCG++++k+++
  Spipo8G0071900 145 CANCDTANTPLWRNGPRGPKSLCNACGIRHKKEER 179
                     ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.8E-18139196IPR000679Zinc finger, GATA-type
PROSITE profilePS5011414.167139175IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.85E-13141182No hitNo description
Gene3DG3DSA:3.30.50.104.1E-16142179IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.72E-12144176No hitNo description
PfamPF003202.2E-16145179IPR000679Zinc finger, GATA-type
PROSITE patternPS003440145170IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009909Biological Processregulation of flower development
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MQKCSRHRRH CSSQVQGSAL MPCSCGLFRR TGGRSGSFSI FLAPTGIHGQ PEQGDTSSSL  60
VDCTLSLGTP STGRQSKPHS KASSLSLVPH QEPHSYPLRW DSIPFQSDQT PSTDTGGGSI  120
PANREAGTGG SGFNLGGDPL VGRRCANCDT ANTPLWRNGP RGPKSLCNAC GIRHKKEERR  180
AGSSAGNPSS SSSSTPTLAA ASHPELQPNH HQNAVGYGYQ HLSMCPASWQ VMEPKRHSVS  240
LFGEEEVMEQ PYLSWRLNIP ASRHAAEFSP SFL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP166537102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50870.12e-26GATA family protein